miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 116314 0.71 0.495352
Target:  5'- uGUCGGcGUCGgcGGCGG-CagCGGCGACg -3'
miRNA:   3'- -CAGCC-CGGCuuUCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 119311 0.66 0.801256
Target:  5'- uUCGGGUCGAGGGUGGcggcucucgCCCugGGCaGCu -3'
miRNA:   3'- cAGCCCGGCUUUCGCCa--------GGG--CCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 119997 0.66 0.766794
Target:  5'- -gCGGGUgGAAgaacacggcgGGCGGUgCCGGCuGAa -3'
miRNA:   3'- caGCCCGgCUU----------UCGCCAgGGCCG-CUg -5'
16201 5' -61.4 NC_004065.1 + 120135 0.66 0.784264
Target:  5'- -cCGGGaccccCCGAc-GCGG-CCgCGGCGACg -3'
miRNA:   3'- caGCCC-----GGCUuuCGCCaGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 120886 0.66 0.775586
Target:  5'- --gGGGUC-AGGGCGGcgucUCgCGGCGACa -3'
miRNA:   3'- cagCCCGGcUUUCGCC----AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 123449 0.69 0.588288
Target:  5'- -aCGGGCCGAAcaGGUGaUgUCGGUGACg -3'
miRNA:   3'- caGCCCGGCUU--UCGCcAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 126412 0.66 0.801256
Target:  5'- cGUCa-GCUGcccGCGGUCCCGGCuGCg -3'
miRNA:   3'- -CAGccCGGCuuuCGCCAGGGCCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 128406 0.68 0.664817
Target:  5'- --gGGGCCGA--GCGG-CagCGGCGGCg -3'
miRNA:   3'- cagCCCGGCUuuCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 128767 0.66 0.757898
Target:  5'- -gCGGcagcGuuGAGGGCGccGUCgCCGGCGGCa -3'
miRNA:   3'- caGCC----CggCUUUCGC--CAG-GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 129560 0.68 0.645689
Target:  5'- aUCGGGCCGAugccGGUGuUCCgGGUGGa -3'
miRNA:   3'- cAGCCCGGCUu---UCGCcAGGgCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 135715 0.66 0.784265
Target:  5'- -cCGGGCUGcgGGCGGggaUCUGGUGGa -3'
miRNA:   3'- caGCCCGGCuuUCGCCa--GGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 136401 0.73 0.39364
Target:  5'- gGUCGGuaGCCgGGGAGCuGGUCCUGGgGGCc -3'
miRNA:   3'- -CAGCC--CGG-CUUUCG-CCAGGGCCgCUG- -5'
16201 5' -61.4 NC_004065.1 + 136616 0.7 0.550494
Target:  5'- -gCGGGgcgcugguCCGAGgcGGCGGUCCgGaGCGGCg -3'
miRNA:   3'- caGCCC--------GGCUU--UCGCCAGGgC-CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 136679 0.67 0.748903
Target:  5'- gGUCuGGCCGgcGGCGGg-CCGGCu-- -3'
miRNA:   3'- -CAGcCCGGCuuUCGCCagGGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 139853 0.71 0.477522
Target:  5'- -gCGGGCgacggCGGAGGCGGcggagCCGGCGGCa -3'
miRNA:   3'- caGCCCG-----GCUUUCGCCag---GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 139877 0.66 0.792824
Target:  5'- --aGGGuCCGugacGGUGGUCCgGGUGAg -3'
miRNA:   3'- cagCCC-GGCuu--UCGCCAGGgCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 141613 0.7 0.559882
Target:  5'- -gCGGGCuccgcugccggCGguGGCGG-CUCGGCGACg -3'
miRNA:   3'- caGCCCG-----------GCuuUCGCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 149031 0.73 0.39364
Target:  5'- cUCGGGCUGAccucggGAGCGGgcgacgaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU------UUCGCCagg----GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 150903 0.72 0.460015
Target:  5'- cGUCGGGaacaagggguCCGAcGGCGGcUCCGGCGGg -3'
miRNA:   3'- -CAGCCC----------GGCUuUCGCCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 151090 0.69 0.636108
Target:  5'- -gCGGGCCuGguGGCGcccgagCUCGGCGACg -3'
miRNA:   3'- caGCCCGG-CuuUCGCca----GGGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.