miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 153611 0.71 0.494453
Target:  5'- aUCGGGUCGGcucGGGCGGcgCCacucggaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU---UUCGCCa-GG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 154786 0.72 0.417806
Target:  5'- cUCGGGCgCGAAuGCGGUCgCGuaGACu -3'
miRNA:   3'- cAGCCCG-GCUUuCGCCAGgGCcgCUG- -5'
16201 5' -61.4 NC_004065.1 + 157717 0.72 0.460015
Target:  5'- cGUCGGGaCC----GCGGUCgCGGCGAUg -3'
miRNA:   3'- -CAGCCC-GGcuuuCGCCAGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 162283 0.67 0.730654
Target:  5'- uUCGGGCgguugcucgUGAacGAGCGGUCgcucgucaCGGCGAUa -3'
miRNA:   3'- cAGCCCG---------GCU--UUCGCCAGg-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 163356 0.7 0.559882
Target:  5'- --gGGGCUGugGGgGG-CCCGGUGGCu -3'
miRNA:   3'- cagCCCGGCuuUCgCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 165098 0.7 0.569313
Target:  5'- --aGGcGCCGucgucucuGAGGCGGcgucccgCCCGGCGACu -3'
miRNA:   3'- cagCC-CGGC--------UUUCGCCa------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 165857 0.66 0.783402
Target:  5'- --gGGGCCGGAcGGUcucucacGGUCCCgaaGGCGAg -3'
miRNA:   3'- cagCCCGGCUU-UCG-------CCAGGG---CCGCUg -5'
16201 5' -61.4 NC_004065.1 + 166912 0.67 0.748903
Target:  5'- -aCGGGCCGuccaccGGCuGUCUCGGC-ACg -3'
miRNA:   3'- caGCCCGGCuu----UCGcCAGGGCCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 168632 0.68 0.693317
Target:  5'- -cUGGuGCCGcgGGCGGagCCGGCGcgGCg -3'
miRNA:   3'- caGCC-CGGCuuUCGCCagGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 169450 0.66 0.757002
Target:  5'- aUCGGgcgccccGCCGuguGCGGaCCCGGCGuCu -3'
miRNA:   3'- cAGCC-------CGGCuuuCGCCaGGGCCGCuG- -5'
16201 5' -61.4 NC_004065.1 + 171280 0.66 0.784265
Target:  5'- aUCGGGCCcGccGUcucuaGUCCUGGCGAUg -3'
miRNA:   3'- cAGCCCGGcUuuCGc----CAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 172097 0.67 0.730654
Target:  5'- --gGGGCCGGgggAGGCGGcucugaCCgCGGUGGCu -3'
miRNA:   3'- cagCCCGGCU---UUCGCCa-----GG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 176325 0.7 0.550494
Target:  5'- --gGGGagGAGGGCGGUCgggCGGCGACa -3'
miRNA:   3'- cagCCCggCUUUCGCCAGg--GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 176474 0.68 0.693316
Target:  5'- uGUCGGGCa-GAGGCGGaggCaCCGG-GACg -3'
miRNA:   3'- -CAGCCCGgcUUUCGCCa--G-GGCCgCUG- -5'
16201 5' -61.4 NC_004065.1 + 182436 0.69 0.59782
Target:  5'- -cUGGGCagccGGgGGUCCUGGUGACg -3'
miRNA:   3'- caGCCCGgcuuUCgCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 184885 0.67 0.748904
Target:  5'- -cCGGGaacgagagaggaUCGGGAGCGGgcgCCCgGGUGGCu -3'
miRNA:   3'- caGCCC------------GGCUUUCGCCa--GGG-CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 194440 0.66 0.775586
Target:  5'- -cCGGGCgccuCGGucgAAGCGGUUgggcaCGGCGGCg -3'
miRNA:   3'- caGCCCG----GCU---UUCGCCAGg----GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 195217 0.67 0.721412
Target:  5'- aUUGGGCC--AGGUGGUgCCCGGaCGGg -3'
miRNA:   3'- cAGCCCGGcuUUCGCCA-GGGCC-GCUg -5'
16201 5' -61.4 NC_004065.1 + 196246 1.09 0.001621
Target:  5'- uGUCGGGCCGAAAGCGGUCCCGGCGACa -3'
miRNA:   3'- -CAGCCCGGCUUUCGCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 197378 0.76 0.250778
Target:  5'- -gCGGGCCGu-GGCGauguugacaggcaGUCCCGGUGACg -3'
miRNA:   3'- caGCCCGGCuuUCGC-------------CAGGGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.