miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 135715 0.66 0.784265
Target:  5'- -cCGGGCUGcgGGCGGggaUCUGGUGGa -3'
miRNA:   3'- caGCCCGGCuuUCGCCa--GGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 129560 0.68 0.645689
Target:  5'- aUCGGGCCGAugccGGUGuUCCgGGUGGa -3'
miRNA:   3'- cAGCCCGGCUu---UCGCcAGGgCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 128767 0.66 0.757898
Target:  5'- -gCGGcagcGuuGAGGGCGccGUCgCCGGCGGCa -3'
miRNA:   3'- caGCC----CggCUUUCGC--CAG-GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 128406 0.68 0.664817
Target:  5'- --gGGGCCGA--GCGG-CagCGGCGGCg -3'
miRNA:   3'- cagCCCGGCUuuCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 126412 0.66 0.801256
Target:  5'- cGUCa-GCUGcccGCGGUCCCGGCuGCg -3'
miRNA:   3'- -CAGccCGGCuuuCGCCAGGGCCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 123449 0.69 0.588288
Target:  5'- -aCGGGCCGAAcaGGUGaUgUCGGUGACg -3'
miRNA:   3'- caGCCCGGCUU--UCGCcAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 120886 0.66 0.775586
Target:  5'- --gGGGUC-AGGGCGGcgucUCgCGGCGACa -3'
miRNA:   3'- cagCCCGGcUUUCGCC----AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 120135 0.66 0.784264
Target:  5'- -cCGGGaccccCCGAc-GCGG-CCgCGGCGACg -3'
miRNA:   3'- caGCCC-----GGCUuuCGCCaGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 119997 0.66 0.766794
Target:  5'- -gCGGGUgGAAgaacacggcgGGCGGUgCCGGCuGAa -3'
miRNA:   3'- caGCCCGgCUU----------UCGCCAgGGCCG-CUg -5'
16201 5' -61.4 NC_004065.1 + 119311 0.66 0.801256
Target:  5'- uUCGGGUCGAGGGUGGcggcucucgCCCugGGCaGCu -3'
miRNA:   3'- cAGCCCGGCUUUCGCCa--------GGG--CCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 116314 0.71 0.495352
Target:  5'- uGUCGGcGUCGgcGGCGG-CagCGGCGACg -3'
miRNA:   3'- -CAGCC-CGGCuuUCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 114831 0.68 0.683851
Target:  5'- cGUCGcggcggccacGGCCGGAuccagGGCcaUCCUGGCGACg -3'
miRNA:   3'- -CAGC----------CCGGCUU-----UCGccAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 113627 0.66 0.775586
Target:  5'- --gGGGCUGGAAGCGGacCCCGuCGuCg -3'
miRNA:   3'- cagCCCGGCUUUCGCCa-GGGCcGCuG- -5'
16201 5' -61.4 NC_004065.1 + 111865 0.72 0.426059
Target:  5'- -aCGGccGCCGcc-GCGGUCUCGGUGACa -3'
miRNA:   3'- caGCC--CGGCuuuCGCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 109885 0.69 0.626524
Target:  5'- cGUCGccgcGGCCGcgucGGGgGGUCCCGGCu-- -3'
miRNA:   3'- -CAGC----CCGGCu---UUCgCCAGGGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 109143 0.67 0.748904
Target:  5'- -gCGGG-UGAcGGCGGUUCCGuCGACa -3'
miRNA:   3'- caGCCCgGCUuUCGCCAGGGCcGCUG- -5'
16201 5' -61.4 NC_004065.1 + 107767 0.66 0.792823
Target:  5'- gGUCGGuGUCGGc-GCGGgagCagCGGCGACa -3'
miRNA:   3'- -CAGCC-CGGCUuuCGCCa--Gg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 107173 0.66 0.780807
Target:  5'- gGUgGGGCUGGAcGCGGUCgucaaggacaagaCGcGCGACu -3'
miRNA:   3'- -CAgCCCGGCUUuCGCCAGg------------GC-CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 106556 0.66 0.801255
Target:  5'- cGUgGGGCuCGcAgcGCGGgucgCUgGGCGACg -3'
miRNA:   3'- -CAgCCCG-GC-UuuCGCCa---GGgCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 106321 0.69 0.626524
Target:  5'- uUCGGGCgcaagaCGGAcaagGGCGG-CCCGGCGcuGCu -3'
miRNA:   3'- cAGCCCG------GCUU----UCGCCaGGGCCGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.