miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 68142 0.68 0.655261
Target:  5'- uGUCGGacgaGCUGGAcGCGGugaUCgCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUUuCGCC---AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 83170 0.7 0.569314
Target:  5'- -aCGcGCCGAugcagaccAGGCGcUCCCGGCGGCc -3'
miRNA:   3'- caGCcCGGCU--------UUCGCcAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 182436 0.69 0.59782
Target:  5'- -cUGGGCagccGGgGGUCCUGGUGACg -3'
miRNA:   3'- caGCCCGgcuuUCgCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 109885 0.69 0.626524
Target:  5'- cGUCGccgcGGCCGcgucGGGgGGUCCCGGCu-- -3'
miRNA:   3'- -CAGC----CCGGCu---UUCgCCAGGGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 37490 0.69 0.636108
Target:  5'- --aGGGCUGu--GCGGaccCCUGGCGGCu -3'
miRNA:   3'- cagCCCGGCuuuCGCCa--GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 151090 0.69 0.636108
Target:  5'- -gCGGGCCuGguGGCGcccgagCUCGGCGACg -3'
miRNA:   3'- caGCCCGG-CuuUCGCca----GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 72919 0.68 0.64569
Target:  5'- ----cGCUGAAGGCGccCCCGGCGGCg -3'
miRNA:   3'- cagccCGGCUUUCGCcaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 25882 0.68 0.655261
Target:  5'- aUCGGGgaCGAAGGUuaucacGGcCCCGGCGGg -3'
miRNA:   3'- cAGCCCg-GCUUUCG------CCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 68745 0.71 0.513479
Target:  5'- gGUCGcuGCCGGAcucggacaucgcGGCGGUgCUGGCGGCc -3'
miRNA:   3'- -CAGCc-CGGCUU------------UCGCCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 70798 0.71 0.503474
Target:  5'- --gGGGCCuGGAGUGGacgacggaauucaUCCUGGCGGCg -3'
miRNA:   3'- cagCCCGGcUUUCGCC-------------AGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 32826 0.71 0.486398
Target:  5'- cGUCGGGCCGcucguccgagaagguGAGcCGGUCCagcgcguUGGCGAUg -3'
miRNA:   3'- -CAGCCCGGCu--------------UUC-GCCAGG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 197378 0.76 0.250778
Target:  5'- -gCGGGCCGu-GGCGauguugacaggcaGUCCCGGUGACg -3'
miRNA:   3'- caGCCCGGCuuUCGC-------------CAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 213464 0.75 0.319916
Target:  5'- cUCGGGCUGAgguguagucgGAGCGGUCgCC-GCGACc -3'
miRNA:   3'- cAGCCCGGCU----------UUCGCCAG-GGcCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 149031 0.73 0.39364
Target:  5'- cUCGGGCUGAccucggGAGCGGgcgacgaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU------UUCGCCagg----GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 154786 0.72 0.417806
Target:  5'- cUCGGGCgCGAAuGCGGUCgCGuaGACu -3'
miRNA:   3'- cAGCCCG-GCUUuCGCCAGgGCcgCUG- -5'
16201 5' -61.4 NC_004065.1 + 74837 0.72 0.442853
Target:  5'- gGUCGGGaCCGAGGGgcgcaGGUUgaGGCGGCg -3'
miRNA:   3'- -CAGCCC-GGCUUUCg----CCAGggCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 41498 0.72 0.460015
Target:  5'- cGUCGGGaCGGggagcgcgcGGGCGGUCCCGccagagucGCGGCc -3'
miRNA:   3'- -CAGCCCgGCU---------UUCGCCAGGGC--------CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 150903 0.72 0.460015
Target:  5'- cGUCGGGaacaagggguCCGAcGGCGGcUCCGGCGGg -3'
miRNA:   3'- -CAGCCC----------GGCUuUCGCCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 157717 0.72 0.460015
Target:  5'- cGUCGGGaCC----GCGGUCgCGGCGAUg -3'
miRNA:   3'- -CAGCCC-GGcuuuCGCCAGgGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.