miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 68142 0.68 0.655261
Target:  5'- uGUCGGacgaGCUGGAcGCGGugaUCgCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUUuCGCC---AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 25882 0.68 0.655261
Target:  5'- aUCGGGgaCGAAGGUuaucacGGcCCCGGCGGg -3'
miRNA:   3'- cAGCCCg-GCUUUCG------CCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 72919 0.68 0.64569
Target:  5'- ----cGCUGAAGGCGccCCCGGCGGCg -3'
miRNA:   3'- cagccCGGCUUUCGCcaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 151090 0.69 0.636108
Target:  5'- -gCGGGCCuGguGGCGcccgagCUCGGCGACg -3'
miRNA:   3'- caGCCCGG-CuuUCGCca----GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 37490 0.69 0.636108
Target:  5'- --aGGGCUGu--GCGGaccCCUGGCGGCu -3'
miRNA:   3'- cagCCCGGCuuuCGCCa--GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 109885 0.69 0.626524
Target:  5'- cGUCGccgcGGCCGcgucGGGgGGUCCCGGCu-- -3'
miRNA:   3'- -CAGC----CCGGCu---UUCgCCAGGGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 182436 0.69 0.59782
Target:  5'- -cUGGGCagccGGgGGUCCUGGUGACg -3'
miRNA:   3'- caGCCCGgcuuUCgCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 153611 0.71 0.494453
Target:  5'- aUCGGGUCGGcucGGGCGGcgCCacucggaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU---UUCGCCa-GG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 104894 0.71 0.495352
Target:  5'- -aCGcGGCUGGGcgacggcgcGGUGGUgCCGGCGGCg -3'
miRNA:   3'- caGC-CCGGCUU---------UCGCCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 116314 0.71 0.495352
Target:  5'- uGUCGGcGUCGgcGGCGG-CagCGGCGACg -3'
miRNA:   3'- -CAGCC-CGGCuuUCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 176325 0.7 0.550494
Target:  5'- --gGGGagGAGGGCGGUCgggCGGCGACa -3'
miRNA:   3'- cagCCCggCUUUCGCCAGg--GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 99376 0.7 0.550494
Target:  5'- cGUUGGGCaugaCGGgcGUGGgcugCCUGGCGGCg -3'
miRNA:   3'- -CAGCCCG----GCUuuCGCCa---GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 139853 0.71 0.477522
Target:  5'- -gCGGGCgacggCGGAGGCGGcggagCCGGCGGCa -3'
miRNA:   3'- caGCCCG-----GCUUUCGCCag---GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 198021 0.72 0.460014
Target:  5'- cUCGGaGgCGGucGCGGUCgCCGGCGGu -3'
miRNA:   3'- cAGCC-CgGCUuuCGCCAG-GGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 111865 0.72 0.426059
Target:  5'- -aCGGccGCCGcc-GCGGUCUCGGUGACa -3'
miRNA:   3'- caGCC--CGGCuuuCGCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 55346 0.73 0.39364
Target:  5'- -aCGGacCCGAcgGAGaacgaGGUCCCGGCGACg -3'
miRNA:   3'- caGCCc-GGCU--UUCg----CCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 136401 0.73 0.39364
Target:  5'- gGUCGGuaGCCgGGGAGCuGGUCCUGGgGGCc -3'
miRNA:   3'- -CAGCC--CGG-CUUUCG-CCAGGGCCgCUG- -5'
16201 5' -61.4 NC_004065.1 + 43577 0.73 0.373443
Target:  5'- -aCGGGCCugccucuggcguggaGGAAGaUGGUCCCGGUGAg -3'
miRNA:   3'- caGCCCGG---------------CUUUC-GCCAGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 106556 0.66 0.801255
Target:  5'- cGUgGGGCuCGcAgcGCGGgucgCUgGGCGACg -3'
miRNA:   3'- -CAgCCCG-GC-UuuCGCCa---GGgCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.