Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16201 | 5' | -61.4 | NC_004065.1 | + | 198607 | 0.67 | 0.727889 |
Target: 5'- cGUCGaGCuCGGAGGCguacucugcgccagGGUCCCGGCcGAg -3' miRNA: 3'- -CAGCcCG-GCUUUCG--------------CCAGGGCCG-CUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 172097 | 0.67 | 0.730654 |
Target: 5'- --gGGGCCGGgggAGGCGGcucugaCCgCGGUGGCu -3' miRNA: 3'- cagCCCGGCU---UUCGCCa-----GG-GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 209553 | 0.67 | 0.730654 |
Target: 5'- -gCGGGaCUGAAGGaGG-CCCGGcCGGCu -3' miRNA: 3'- caGCCC-GGCUUUCgCCaGGGCC-GCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 123449 | 0.69 | 0.588288 |
Target: 5'- -aCGGGCCGAAcaGGUGaUgUCGGUGACg -3' miRNA: 3'- caGCCCGGCUU--UCGCcAgGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 31076 | 0.69 | 0.587336 |
Target: 5'- cUCGcGGCUGGuggccacGGGCGGcgaucagaacgCCCGGCGGCg -3' miRNA: 3'- cAGC-CCGGCU-------UUCGCCa----------GGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 165098 | 0.7 | 0.569313 |
Target: 5'- --aGGcGCCGucgucucuGAGGCGGcgucccgCCCGGCGACu -3' miRNA: 3'- cagCC-CGGC--------UUUCGCCa------GGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 43577 | 0.73 | 0.373443 |
Target: 5'- -aCGGGCCugccucuggcguggaGGAAGaUGGUCCCGGUGAg -3' miRNA: 3'- caGCCCGG---------------CUUUC-GCCAGGGCCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 136401 | 0.73 | 0.39364 |
Target: 5'- gGUCGGuaGCCgGGGAGCuGGUCCUGGgGGCc -3' miRNA: 3'- -CAGCC--CGG-CUUUCG-CCAGGGCCgCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 55346 | 0.73 | 0.39364 |
Target: 5'- -aCGGacCCGAcgGAGaacgaGGUCCCGGCGACg -3' miRNA: 3'- caGCCc-GGCU--UUCg----CCAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 111865 | 0.72 | 0.426059 |
Target: 5'- -aCGGccGCCGcc-GCGGUCUCGGUGACa -3' miRNA: 3'- caGCC--CGGCuuuCGCCAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 198021 | 0.72 | 0.460014 |
Target: 5'- cUCGGaGgCGGucGCGGUCgCCGGCGGu -3' miRNA: 3'- cAGCC-CgGCUuuCGCCAG-GGCCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 139853 | 0.71 | 0.477522 |
Target: 5'- -gCGGGCgacggCGGAGGCGGcggagCCGGCGGCa -3' miRNA: 3'- caGCCCG-----GCUUUCGCCag---GGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 153611 | 0.71 | 0.494453 |
Target: 5'- aUCGGGUCGGcucGGGCGGcgCCacucggaCGGCGGCg -3' miRNA: 3'- cAGCCCGGCU---UUCGCCa-GG-------GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 104894 | 0.71 | 0.495352 |
Target: 5'- -aCGcGGCUGGGcgacggcgcGGUGGUgCCGGCGGCg -3' miRNA: 3'- caGC-CCGGCUU---------UCGCCAgGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 116314 | 0.71 | 0.495352 |
Target: 5'- uGUCGGcGUCGgcGGCGG-CagCGGCGACg -3' miRNA: 3'- -CAGCC-CGGCuuUCGCCaGg-GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 176325 | 0.7 | 0.550494 |
Target: 5'- --gGGGagGAGGGCGGUCgggCGGCGACa -3' miRNA: 3'- cagCCCggCUUUCGCCAGg--GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 99376 | 0.7 | 0.550494 |
Target: 5'- cGUUGGGCaugaCGGgcGUGGgcugCCUGGCGGCg -3' miRNA: 3'- -CAGCCCG----GCUuuCGCCa---GGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 136616 | 0.7 | 0.550494 |
Target: 5'- -gCGGGgcgcugguCCGAGgcGGCGGUCCgGaGCGGCg -3' miRNA: 3'- caGCCC--------GGCUU--UCGCCAGGgC-CGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 163356 | 0.7 | 0.559882 |
Target: 5'- --gGGGCUGugGGgGG-CCCGGUGGCu -3' miRNA: 3'- cagCCCGGCuuUCgCCaGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 141613 | 0.7 | 0.559882 |
Target: 5'- -gCGGGCuccgcugccggCGguGGCGG-CUCGGCGACg -3' miRNA: 3'- caGCCCG-----------GCuuUCGCCaGGGCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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