miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 141613 0.7 0.559882
Target:  5'- -gCGGGCuccgcugccggCGguGGCGG-CUCGGCGACg -3'
miRNA:   3'- caGCCCG-----------GCuuUCGCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 163356 0.7 0.559882
Target:  5'- --gGGGCUGugGGgGG-CCCGGUGGCu -3'
miRNA:   3'- cagCCCGGCuuUCgCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 31076 0.69 0.587336
Target:  5'- cUCGcGGCUGGuggccacGGGCGGcgaucagaacgCCCGGCGGCg -3'
miRNA:   3'- cAGC-CCGGCU-------UUCGCCa----------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 41498 0.72 0.460015
Target:  5'- cGUCGGGaCGGggagcgcgcGGGCGGUCCCGccagagucGCGGCc -3'
miRNA:   3'- -CAGCCCgGCU---------UUCGCCAGGGC--------CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 197939 0.67 0.73982
Target:  5'- gGUCGGcgaGUCG-AAGCGGUCgCGGCa-- -3'
miRNA:   3'- -CAGCC---CGGCuUUCGCCAGgGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 74837 0.72 0.442853
Target:  5'- gGUCGGGaCCGAGGGgcgcaGGUUgaGGCGGCg -3'
miRNA:   3'- -CAGCCC-GGCUUUCg----CCAGggCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 213464 0.75 0.319916
Target:  5'- cUCGGGCUGAgguguagucgGAGCGGUCgCC-GCGACc -3'
miRNA:   3'- cAGCCCGGCU----------UUCGCCAG-GGcCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 201419 0.67 0.721413
Target:  5'- -gCGGGUCGGGAGUGGaaccacagcUCCUGGuCGGg -3'
miRNA:   3'- caGCCCGGCUUUCGCC---------AGGGCC-GCUg -5'
16201 5' -61.4 NC_004065.1 + 126412 0.66 0.801256
Target:  5'- cGUCa-GCUGcccGCGGUCCCGGCuGCg -3'
miRNA:   3'- -CAGccCGGCuuuCGCCAGGGCCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 223213 0.67 0.721413
Target:  5'- -aCGGGaguCGucGGCGGUagCGGCGACg -3'
miRNA:   3'- caGCCCg--GCuuUCGCCAggGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 200577 0.67 0.730654
Target:  5'- -aCGGGUgGAGaagGGUGGUCgCGGCGu- -3'
miRNA:   3'- caGCCCGgCUU---UCGCCAGgGCCGCug -5'
16201 5' -61.4 NC_004065.1 + 162283 0.67 0.730654
Target:  5'- uUCGGGCgguugcucgUGAacGAGCGGUCgcucgucaCGGCGAUa -3'
miRNA:   3'- cAGCCCG---------GCU--UUCGCCAGg-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 35597 0.67 0.712105
Target:  5'- cGUCGGcgguGUCGGu-GCGGgaUCCaCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUuuCGCC--AGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 168632 0.68 0.693317
Target:  5'- -cUGGuGCCGcgGGCGGagCCGGCGcgGCg -3'
miRNA:   3'- caGCC-CGGCuuUCGCCagGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 62345 0.68 0.687643
Target:  5'- cUCGGGCUGGGucgucgguuuucgacGGCGGUggCGGCGGg -3'
miRNA:   3'- cAGCCCGGCUU---------------UCGCCAggGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 182436 0.69 0.59782
Target:  5'- -cUGGGCagccGGgGGUCCUGGUGACg -3'
miRNA:   3'- caGCCCGgcuuUCgCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 83170 0.7 0.569314
Target:  5'- -aCGcGCCGAugcagaccAGGCGcUCCCGGCGGCc -3'
miRNA:   3'- caGCcCGGCU--------UUCGCcAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 76740 0.66 0.792824
Target:  5'- -gCGGGgaCGGgcGCGG-CgCCGGCGGCc -3'
miRNA:   3'- caGCCCg-GCUuuCGCCaG-GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 68745 0.71 0.513479
Target:  5'- gGUCGcuGCCGGAcucggacaucgcGGCGGUgCUGGCGGCc -3'
miRNA:   3'- -CAGCc-CGGCUU------------UCGCCAgGGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.