miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 130056 0.66 0.914097
Target:  5'- -cCCGCGg-CCCGaGCACGccGCGGCg -3'
miRNA:   3'- caGGUGCgaGGGUcUGUGUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 59757 0.66 0.914097
Target:  5'- -aCCGCGUggCCgauGGugGCGGcGGCGGCc -3'
miRNA:   3'- caGGUGCGagGG---UCugUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 116713 0.66 0.914097
Target:  5'- aUCC-CGCgUCCGGcGCGCGA-GCGGCg -3'
miRNA:   3'- cAGGuGCGaGGGUC-UGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 229531 0.66 0.914097
Target:  5'- -cCCGCcUUCCgCGGACGCGGcGcGCGGCc -3'
miRNA:   3'- caGGUGcGAGG-GUCUGUGUU-C-CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 115036 0.66 0.914097
Target:  5'- aUCCGCGCggccgCCaGGGC-CGAGGgcaaCGGCg -3'
miRNA:   3'- cAGGUGCGa----GGgUCUGuGUUCC----GCCG- -5'
16202 5' -57.9 NC_004065.1 + 113889 0.66 0.914097
Target:  5'- gGUUCGCgGCUCuuacgCCGGACGagAGGGCGGa -3'
miRNA:   3'- -CAGGUG-CGAG-----GGUCUGUg-UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 199529 0.66 0.914097
Target:  5'- cGUgCGCGCagCCGGGCGCcuccagccGGGCGcGCc -3'
miRNA:   3'- -CAgGUGCGagGGUCUGUGu-------UCCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 73281 0.66 0.914097
Target:  5'- aUCCAccCGUUCCgAGcccugucuaGCGCGAucauGGCGGCg -3'
miRNA:   3'- cAGGU--GCGAGGgUC---------UGUGUU----CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 202503 0.66 0.914097
Target:  5'- aUCCGgGUgaccacaCCCAGACAgaucaGAGGCGcGCu -3'
miRNA:   3'- cAGGUgCGa------GGGUCUGUg----UUCCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 124935 0.66 0.914097
Target:  5'- -aCCACGCgcaCCAGGuuCGCGuuGcGCGGCa -3'
miRNA:   3'- caGGUGCGag-GGUCU--GUGUu-C-CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 65286 0.66 0.912392
Target:  5'- -gCCGCgGCgUCCAGAagcaucgacgaguuCAgCGAGGCGGCg -3'
miRNA:   3'- caGGUG-CGaGGGUCU--------------GU-GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 131380 0.66 0.910666
Target:  5'- -aCCGCGCguacguacgagcgaCCgAGcGCACcgAAGGCGGCg -3'
miRNA:   3'- caGGUGCGa-------------GGgUC-UGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 130511 0.66 0.910666
Target:  5'- -gCCGCGCgUCCUccucgugcgcgccagGGACccCAAcGGCGGCa -3'
miRNA:   3'- caGGUGCG-AGGG---------------UCUGu-GUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127116 0.66 0.908336
Target:  5'- cGUCCAguuCUCCCccauCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUgc-GAGGGucu-GUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 72699 0.66 0.908336
Target:  5'- -gCCGaGCgaCCCGGACuucguCAAGGUGGUg -3'
miRNA:   3'- caGGUgCGa-GGGUCUGu----GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 121529 0.66 0.908336
Target:  5'- uGUCCGgGUgccgguacaucuUCCCcacacacaGGACGCAGGGCGccuGCg -3'
miRNA:   3'- -CAGGUgCG------------AGGG--------UCUGUGUUCCGC---CG- -5'
16202 5' -57.9 NC_004065.1 + 4658 0.66 0.908336
Target:  5'- -cCCGcCGCgggcgUCCAGAgACAGaggacuccGGCGGCg -3'
miRNA:   3'- caGGU-GCGa----GGGUCUgUGUU--------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 194766 0.66 0.908336
Target:  5'- cGUCuCGCGCcgUCCCgAGACcgggucgcGCAGGGCGa- -3'
miRNA:   3'- -CAG-GUGCG--AGGG-UCUG--------UGUUCCGCcg -5'
16202 5' -57.9 NC_004065.1 + 149682 0.66 0.907748
Target:  5'- gGUCCACgGUUCCCAGAacuCAguaugaaAGGCGuCg -3'
miRNA:   3'- -CAGGUG-CGAGGGUCUgu-GU-------UCCGCcG- -5'
16202 5' -57.9 NC_004065.1 + 164129 0.66 0.902356
Target:  5'- uUCCAgGCg-CCGcGGCAuCAgcAGGCGGCa -3'
miRNA:   3'- cAGGUgCGagGGU-CUGU-GU--UCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.