miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 201078 0.67 0.883129
Target:  5'- -cCCGC-CUCCgGcGACG-GAGGCGGCg -3'
miRNA:   3'- caGGUGcGAGGgU-CUGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 155221 0.67 0.883129
Target:  5'- cUCCACGCUCgUCAGcaucuuGCGCGAGcGCuGCc -3'
miRNA:   3'- cAGGUGCGAG-GGUC------UGUGUUC-CGcCG- -5'
16202 5' -57.9 NC_004065.1 + 110583 0.67 0.883129
Target:  5'- uGUCCaucACGCUgCCCAaGCACAGGGUccugacccucGGUc -3'
miRNA:   3'- -CAGG---UGCGA-GGGUcUGUGUUCCG----------CCG- -5'
16202 5' -57.9 NC_004065.1 + 122444 0.67 0.883129
Target:  5'- cGUCgAuCGUgaUCUCGGGCAggguCAGGGUGGCg -3'
miRNA:   3'- -CAGgU-GCG--AGGGUCUGU----GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 225150 0.67 0.882456
Target:  5'- ---gACGCUCCUccugGGugACcgagccgAGGGCGGCg -3'
miRNA:   3'- caggUGCGAGGG----UCugUG-------UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 170343 0.67 0.868559
Target:  5'- uUCUACGacgaCUCGGACgacgaggACGAGGUGGCg -3'
miRNA:   3'- cAGGUGCga--GGGUCUG-------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 122042 0.67 0.862046
Target:  5'- uGUUCACGUUCaacuuCCAGG-ACGGGGaCGGCu -3'
miRNA:   3'- -CAGGUGCGAG-----GGUCUgUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 86496 0.67 0.876302
Target:  5'- uGUCCcC-CUCCCAGACGuCGAGGaCGcuGCu -3'
miRNA:   3'- -CAGGuGcGAGGGUCUGU-GUUCC-GC--CG- -5'
16202 5' -57.9 NC_004065.1 + 130677 0.67 0.876302
Target:  5'- -gCCaACGCUCgUCGGGCGagGAGGCGGa -3'
miRNA:   3'- caGG-UGCGAG-GGUCUGUg-UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 146780 0.67 0.876302
Target:  5'- -cCUACGCcaCCCAGACcgccguGCAGuaugcuccucccGGCGGCg -3'
miRNA:   3'- caGGUGCGa-GGGUCUG------UGUU------------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 83446 0.67 0.876302
Target:  5'- -gCCGgGCUCC--GGCACGA-GCGGCa -3'
miRNA:   3'- caGGUgCGAGGguCUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 76519 0.67 0.883129
Target:  5'- -gCCACGCUCuCCAGAC-CGAuGCccugacucuuGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUUcCG----------CCG- -5'
16202 5' -57.9 NC_004065.1 + 192843 0.67 0.883129
Target:  5'- --gC-CGCUCUCGGugAC--GGCGGCg -3'
miRNA:   3'- cagGuGCGAGGGUCugUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 40140 0.67 0.883129
Target:  5'- cUCCGCGCUCgUgAGACGCugccgacGGCaGCa -3'
miRNA:   3'- cAGGUGCGAG-GgUCUGUGuu-----CCGcCG- -5'
16202 5' -57.9 NC_004065.1 + 211925 0.67 0.876302
Target:  5'- uUCCGCGacagagaUgCCGGcCACGAGGCugcGGCg -3'
miRNA:   3'- cAGGUGCg------AgGGUCuGUGUUCCG---CCG- -5'
16202 5' -57.9 NC_004065.1 + 124518 0.67 0.84702
Target:  5'- cUgCGCGUUCUCGGGCACGugcgccaccAGGUGGa -3'
miRNA:   3'- cAgGUGCGAGGGUCUGUGU---------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 49638 0.67 0.852364
Target:  5'- cGUCCAguUGC-CCCAGACGguggaccaguuuccCGuGGCGGUg -3'
miRNA:   3'- -CAGGU--GCGaGGGUCUGU--------------GUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 71320 0.67 0.854626
Target:  5'- cUCCuCGCUCCUguuGGGCAUc--GCGGCg -3'
miRNA:   3'- cAGGuGCGAGGG---UCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 199259 0.67 0.864234
Target:  5'- cGUCCGCGUccgccgaccucggauUCCgAGGgcagccuCugAAGGUGGCg -3'
miRNA:   3'- -CAGGUGCG---------------AGGgUCU-------GugUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 74138 0.67 0.869273
Target:  5'- cGUCgAgGCgggugCCCGGGC-CGagaaccccgcAGGCGGCg -3'
miRNA:   3'- -CAGgUgCGa----GGGUCUGuGU----------UCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.