Results 61 - 80 of 138 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 110583 | 0.67 | 0.883129 |
Target: 5'- uGUCCaucACGCUgCCCAaGCACAGGGUccugacccucGGUc -3' miRNA: 3'- -CAGG---UGCGA-GGGUcUGUGUUCCG----------CCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 122444 | 0.67 | 0.883129 |
Target: 5'- cGUCgAuCGUgaUCUCGGGCAggguCAGGGUGGCg -3' miRNA: 3'- -CAGgU-GCG--AGGGUCUGU----GUUCCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 225150 | 0.67 | 0.882456 |
Target: 5'- ---gACGCUCCUccugGGugACcgagccgAGGGCGGCg -3' miRNA: 3'- caggUGCGAGGG----UCugUG-------UUCCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 146780 | 0.67 | 0.876302 |
Target: 5'- -cCUACGCcaCCCAGACcgccguGCAGuaugcuccucccGGCGGCg -3' miRNA: 3'- caGGUGCGa-GGGUCUG------UGUU------------CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 7148 | 0.68 | 0.814849 |
Target: 5'- aUCCACGUcgCCGGuuuCACGGGGaUGGCg -3' miRNA: 3'- cAGGUGCGagGGUCu--GUGUUCC-GCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 193142 | 0.68 | 0.83127 |
Target: 5'- uGUCCGCG-UCa-GGACGCcugcugcuGGGCGGCg -3' miRNA: 3'- -CAGGUGCgAGggUCUGUGu-------UCCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 212036 | 0.68 | 0.82314 |
Target: 5'- cUCCA-GCUCCCcGACACccaaGAGgucgcGCGGCa -3' miRNA: 3'- cAGGUgCGAGGGuCUGUG----UUC-----CGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 157913 | 0.68 | 0.818184 |
Target: 5'- cGUCCAcCGUccuccugUCCAGucuggcgaucaggccGCGCAGGGUGGCg -3' miRNA: 3'- -CAGGU-GCGa------GGGUC---------------UGUGUUCCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 99930 | 0.68 | 0.814849 |
Target: 5'- cGUCCAUGacgCCGGACcgccGCGGcGGCGGCu -3' miRNA: 3'- -CAGGUGCgagGGUCUG----UGUU-CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 613 | 0.68 | 0.814849 |
Target: 5'- -gUUACGCgCUCAGGCuCGucAGGCGGCg -3' miRNA: 3'- caGGUGCGaGGGUCUGuGU--UCCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 132388 | 0.68 | 0.839232 |
Target: 5'- -aCCgGCGuCUCCguGcCGCAAgGGCGGCu -3' miRNA: 3'- caGG-UGC-GAGGguCuGUGUU-CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 71650 | 0.68 | 0.814849 |
Target: 5'- cGUCCGCGggacgaagggcCUCCuCAGcaGCAgCAGcGGCGGCg -3' miRNA: 3'- -CAGGUGC-----------GAGG-GUC--UGU-GUU-CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 22839 | 0.68 | 0.839232 |
Target: 5'- -cCCACGCUCaaaaCGuGCGCGAGGUucacGGCc -3' miRNA: 3'- caGGUGCGAGg---GUcUGUGUUCCG----CCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 169105 | 0.68 | 0.839232 |
Target: 5'- -gCCACG-UCCugaCAGACGCGGGccGCGGCc -3' miRNA: 3'- caGGUGCgAGG---GUCUGUGUUC--CGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 101581 | 0.68 | 0.839232 |
Target: 5'- --aCACGUaUUCGGACAgggaGAGGCGGCg -3' miRNA: 3'- cagGUGCGaGGGUCUGUg---UUCCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 194353 | 0.68 | 0.83127 |
Target: 5'- cUCCugGCUCgCGagcgacGugGCGAucGGCGGCc -3' miRNA: 3'- cAGGugCGAGgGU------CugUGUU--CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 187394 | 0.68 | 0.814849 |
Target: 5'- gGUCCAcCGuCUCUCGGACACGu-GCGaGCu -3' miRNA: 3'- -CAGGU-GC-GAGGGUCUGUGUucCGC-CG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 44516 | 0.68 | 0.806403 |
Target: 5'- cGUCCggcgGCGCgauguuaCCGGGgACGGuGGCGGCg -3' miRNA: 3'- -CAGG----UGCGag-----GGUCUgUGUU-CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 42722 | 0.68 | 0.806403 |
Target: 5'- cUCCucCGC-CCCAGugauCGCAGcgcGGCGGCc -3' miRNA: 3'- cAGGu-GCGaGGGUCu---GUGUU---CCGCCG- -5' |
|||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 30571 | 0.68 | 0.814849 |
Target: 5'- cGUCCGCGacuucgcgUCCCAG-CugG-GGUGGCu -3' miRNA: 3'- -CAGGUGCg-------AGGGUCuGugUuCCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home