Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 196957 | 1.11 | 0.002018 |
Target: 5'- gGUCCACGCUCCCAGACACAAGGCGGCg -3' miRNA: 3'- -CAGGUGCGAGGGUCUGUGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 188724 | 0.78 | 0.293144 |
Target: 5'- uGUCCAgGCUUaauagCAGGCGCAcGGCGGCg -3' miRNA: 3'- -CAGGUgCGAGg----GUCUGUGUuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 131855 | 0.76 | 0.396431 |
Target: 5'- -aCCACGCUgagCCUAGGCgGCGGuGGCGGCg -3' miRNA: 3'- caGGUGCGA---GGGUCUG-UGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 88525 | 0.75 | 0.418874 |
Target: 5'- uGUCCGCGCUCguccaggacccugaCCAGGCAgAAaGCGGCc -3' miRNA: 3'- -CAGGUGCGAG--------------GGUCUGUgUUcCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 194836 | 0.75 | 0.421415 |
Target: 5'- -gCCACGUUCuCCAGGC-CGAccacGGCGGCg -3' miRNA: 3'- caGGUGCGAG-GGUCUGuGUU----CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 5786 | 0.74 | 0.483195 |
Target: 5'- cUCC-CGCUCgCCGGGCGCAggaggaaaaaaAGGCGGa -3' miRNA: 3'- cAGGuGCGAG-GGUCUGUGU-----------UCCGCCg -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 29080 | 0.74 | 0.483195 |
Target: 5'- -gCCGCGCUCCCu-GCGCuccGAGGCGGa -3' miRNA: 3'- caGGUGCGAGGGucUGUG---UUCCGCCg -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 45526 | 0.74 | 0.510983 |
Target: 5'- gGUCUACGCcaCCCGGcgcCGCGGcGGCGGCg -3' miRNA: 3'- -CAGGUGCGa-GGGUCu--GUGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 132094 | 0.74 | 0.492379 |
Target: 5'- -gCCACGCcggUgCCGGACGCGcGGCGGUu -3' miRNA: 3'- caGGUGCG---AgGGUCUGUGUuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 29567 | 0.73 | 0.520394 |
Target: 5'- -gCCGCGCUCCCGcuauCugAcGGCGGCc -3' miRNA: 3'- caGGUGCGAGGGUcu--GugUuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 96238 | 0.73 | 0.572251 |
Target: 5'- cUCCGCGuCUCCCGGcucguggucgaggauGCggauggacgGCGGGGCGGCc -3' miRNA: 3'- cAGGUGC-GAGGGUC---------------UG---------UGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 158489 | 0.73 | 0.56836 |
Target: 5'- --aCACGUccgUCCCGcGAUAUAAGGCGGUa -3' miRNA: 3'- cagGUGCG---AGGGU-CUGUGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 79569 | 0.72 | 0.587875 |
Target: 5'- -gCgGCGCUUCCuGGC-CGAGGUGGCc -3' miRNA: 3'- caGgUGCGAGGGuCUGuGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 3140 | 0.72 | 0.597681 |
Target: 5'- uUCCGCGgUCCCGGGC-CAAGuuucuaccucaaGUGGCa -3' miRNA: 3'- cAGGUGCgAGGGUCUGuGUUC------------CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 115783 | 0.72 | 0.607509 |
Target: 5'- gGUUgGCGgUCCCGGGCACGGaaacuGCGGCc -3' miRNA: 3'- -CAGgUGCgAGGGUCUGUGUUc----CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 198016 | 0.72 | 0.617355 |
Target: 5'- --gCAUGCUCuCCAGACGCuccuuGCGGCg -3' miRNA: 3'- cagGUGCGAG-GGUCUGUGuuc--CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 120874 | 0.72 | 0.617355 |
Target: 5'- -aCCG-GCUugCCCGGGguCAGGGCGGCg -3' miRNA: 3'- caGGUgCGA--GGGUCUguGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 83165 | 0.72 | 0.576149 |
Target: 5'- cGUUCACGCgccgaugcagaCCAGGCGCucccGGCGGCc -3' miRNA: 3'- -CAGGUGCGag---------GGUCUGUGuu--CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 154129 | 0.71 | 0.676401 |
Target: 5'- uGUCCAcaugggacgauCGC-CCCGGGCGgu-GGCGGCg -3' miRNA: 3'- -CAGGU-----------GCGaGGGUCUGUguuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 127639 | 0.71 | 0.637071 |
Target: 5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3' miRNA: 3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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