Results 41 - 60 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 204529 | 0.69 | 0.771233 |
Target: 5'- -aCCGuCGUggUCgCCAGACGCcucgucGGGCGGCg -3' miRNA: 3'- caGGU-GCG--AG-GGUCUGUGu-----UCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 151340 | 0.69 | 0.771233 |
Target: 5'- cGUUCAgauacuCGCUCUCGGGCGCc--GCGGCg -3' miRNA: 3'- -CAGGU------GCGAGGGUCUGUGuucCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 158061 | 0.69 | 0.771233 |
Target: 5'- cUCCGgGCUgCCCGGcucCACc-GGCGGCg -3' miRNA: 3'- cAGGUgCGA-GGGUCu--GUGuuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 55584 | 0.69 | 0.752925 |
Target: 5'- gGUCC-CGCcgUCGGACACGAGGaugGGCg -3' miRNA: 3'- -CAGGuGCGagGGUCUGUGUUCCg--CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 191538 | 0.69 | 0.762132 |
Target: 5'- gGUCCACGU--CCAG-CA-AGGGCGGCu -3' miRNA: 3'- -CAGGUGCGagGGUCuGUgUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 109767 | 0.69 | 0.771233 |
Target: 5'- uUCUACGCg-CCGGucaGCAGGGCaGGCg -3' miRNA: 3'- cAGGUGCGagGGUCug-UGUUCCG-CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 80130 | 0.69 | 0.780218 |
Target: 5'- gGUgCAgGUcgUCCCuGGCGCGgcagAGGCGGCu -3' miRNA: 3'- -CAgGUgCG--AGGGuCUGUGU----UCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 99540 | 0.69 | 0.780218 |
Target: 5'- gGUCgGCGCUCCCGucuCGCc--GCGGCg -3' miRNA: 3'- -CAGgUGCGAGGGUcu-GUGuucCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 195030 | 0.69 | 0.780218 |
Target: 5'- -gCCGCGCUCguCCAuGAC-CAGGGCgcacGGCg -3' miRNA: 3'- caGGUGCGAG--GGU-CUGuGUUCCG----CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 85156 | 0.69 | 0.78908 |
Target: 5'- aUCCA-GCUCCCAGACG--GGGaaGGCc -3' miRNA: 3'- cAGGUgCGAGGGUCUGUguUCCg-CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 101506 | 0.69 | 0.779325 |
Target: 5'- cGUCgACGC-CgCGGAgGCAucgucgucgguggAGGCGGCa -3' miRNA: 3'- -CAGgUGCGaGgGUCUgUGU-------------UCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 105542 | 0.69 | 0.752925 |
Target: 5'- aUCCGCGCggCCCuggacccGGCGCA--GCGGCa -3' miRNA: 3'- cAGGUGCGa-GGGu------CUGUGUucCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 30604 | 0.69 | 0.752925 |
Target: 5'- cGUCCGCGUUCCgAGGCAgCGAcGCGuGUc -3' miRNA: 3'- -CAGGUGCGAGGgUCUGU-GUUcCGC-CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 174607 | 0.69 | 0.780218 |
Target: 5'- -cCCGCGC-CCCGGACAgccCAucAGGcCGGUc -3' miRNA: 3'- caGGUGCGaGGGUCUGU---GU--UCC-GCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 103678 | 0.69 | 0.78908 |
Target: 5'- aUCCugGacaaCCCGGAgaccuaCACGguGGGCGGCg -3' miRNA: 3'- cAGGugCga--GGGUCU------GUGU--UCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 187394 | 0.68 | 0.814849 |
Target: 5'- gGUCCAcCGuCUCUCGGACACGu-GCGaGCu -3' miRNA: 3'- -CAGGU-GC-GAGGGUCUGUGUucCGC-CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 169105 | 0.68 | 0.839232 |
Target: 5'- -gCCACG-UCCugaCAGACGCGGGccGCGGCc -3' miRNA: 3'- caGGUGCgAGG---GUCUGUGUUC--CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 22839 | 0.68 | 0.839232 |
Target: 5'- -cCCACGCUCaaaaCGuGCGCGAGGUucacGGCc -3' miRNA: 3'- caGGUGCGAGg---GUcUGUGUUCCG----CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 71650 | 0.68 | 0.814849 |
Target: 5'- cGUCCGCGggacgaagggcCUCCuCAGcaGCAgCAGcGGCGGCg -3' miRNA: 3'- -CAGGUGC-----------GAGG-GUC--UGU-GUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 44516 | 0.68 | 0.806403 |
Target: 5'- cGUCCggcgGCGCgauguuaCCGGGgACGGuGGCGGCg -3' miRNA: 3'- -CAGG----UGCGag-----GGUCUgUGUU-CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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