miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 196957 1.11 0.002018
Target:  5'- gGUCCACGCUCCCAGACACAAGGCGGCg -3'
miRNA:   3'- -CAGGUGCGAGGGUCUGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 188724 0.78 0.293144
Target:  5'- uGUCCAgGCUUaauagCAGGCGCAcGGCGGCg -3'
miRNA:   3'- -CAGGUgCGAGg----GUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 131855 0.76 0.396431
Target:  5'- -aCCACGCUgagCCUAGGCgGCGGuGGCGGCg -3'
miRNA:   3'- caGGUGCGA---GGGUCUG-UGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88525 0.75 0.418874
Target:  5'- uGUCCGCGCUCguccaggacccugaCCAGGCAgAAaGCGGCc -3'
miRNA:   3'- -CAGGUGCGAG--------------GGUCUGUgUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 194836 0.75 0.421415
Target:  5'- -gCCACGUUCuCCAGGC-CGAccacGGCGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUU----CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29080 0.74 0.483195
Target:  5'- -gCCGCGCUCCCu-GCGCuccGAGGCGGa -3'
miRNA:   3'- caGGUGCGAGGGucUGUG---UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 5786 0.74 0.483195
Target:  5'- cUCC-CGCUCgCCGGGCGCAggaggaaaaaaAGGCGGa -3'
miRNA:   3'- cAGGuGCGAG-GGUCUGUGU-----------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 132094 0.74 0.492379
Target:  5'- -gCCACGCcggUgCCGGACGCGcGGCGGUu -3'
miRNA:   3'- caGGUGCG---AgGGUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 45526 0.74 0.510983
Target:  5'- gGUCUACGCcaCCCGGcgcCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUGCGa-GGGUCu--GUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29567 0.73 0.520394
Target:  5'- -gCCGCGCUCCCGcuauCugAcGGCGGCc -3'
miRNA:   3'- caGGUGCGAGGGUcu--GugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 158489 0.73 0.56836
Target:  5'- --aCACGUccgUCCCGcGAUAUAAGGCGGUa -3'
miRNA:   3'- cagGUGCG---AGGGU-CUGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 96238 0.73 0.572251
Target:  5'- cUCCGCGuCUCCCGGcucguggucgaggauGCggauggacgGCGGGGCGGCc -3'
miRNA:   3'- cAGGUGC-GAGGGUC---------------UG---------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 83165 0.72 0.576149
Target:  5'- cGUUCACGCgccgaugcagaCCAGGCGCucccGGCGGCc -3'
miRNA:   3'- -CAGGUGCGag---------GGUCUGUGuu--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 79569 0.72 0.587875
Target:  5'- -gCgGCGCUUCCuGGC-CGAGGUGGCc -3'
miRNA:   3'- caGgUGCGAGGGuCUGuGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3140 0.72 0.597681
Target:  5'- uUCCGCGgUCCCGGGC-CAAGuuucuaccucaaGUGGCa -3'
miRNA:   3'- cAGGUGCgAGGGUCUGuGUUC------------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 115783 0.72 0.607509
Target:  5'- gGUUgGCGgUCCCGGGCACGGaaacuGCGGCc -3'
miRNA:   3'- -CAGgUGCgAGGGUCUGUGUUc----CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 198016 0.72 0.617355
Target:  5'- --gCAUGCUCuCCAGACGCuccuuGCGGCg -3'
miRNA:   3'- cagGUGCGAG-GGUCUGUGuuc--CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120874 0.72 0.617355
Target:  5'- -aCCG-GCUugCCCGGGguCAGGGCGGCg -3'
miRNA:   3'- caGGUgCGA--GGGUCUguGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127639 0.71 0.637071
Target:  5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3'
miRNA:   3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 50905 0.71 0.637071
Target:  5'- cUCCAcCGC-CaCCAGGCACGGGGUucacgGGCa -3'
miRNA:   3'- cAGGU-GCGaG-GGUCUGUGUUCCG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.