Results 21 - 40 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 127639 | 0.71 | 0.637071 |
Target: 5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3' miRNA: 3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 50905 | 0.71 | 0.637071 |
Target: 5'- cUCCAcCGC-CaCCAGGCACGGGGUucacgGGCa -3' miRNA: 3'- cAGGU-GCGaG-GGUCUGUGUUCCG-----CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 101592 | 0.71 | 0.646927 |
Target: 5'- cUCCGcCGCgCUCAGACuCGGuGGCGGCg -3' miRNA: 3'- cAGGU-GCGaGGGUCUGuGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 120093 | 0.71 | 0.656773 |
Target: 5'- -cUCAUGacCUCCCgGGACGCGAcGGCGGCc -3' miRNA: 3'- caGGUGC--GAGGG-UCUGUGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 151525 | 0.71 | 0.656773 |
Target: 5'- aUCCGCGC-CCUGGAC----GGCGGCa -3' miRNA: 3'- cAGGUGCGaGGGUCUGuguuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 154129 | 0.71 | 0.676401 |
Target: 5'- uGUCCAcaugggacgauCGC-CCCGGGCGgu-GGCGGCg -3' miRNA: 3'- -CAGGU-----------GCGaGGGUCUGUguuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 198674 | 0.7 | 0.685193 |
Target: 5'- cGUCC-CGCggauuUUCCGGACGggguguuUAAGGCGGCc -3' miRNA: 3'- -CAGGuGCG-----AGGGUCUGU-------GUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 68520 | 0.7 | 0.695894 |
Target: 5'- ---gACGCaucUCCCGGAgGCcgagGAGGCGGCg -3' miRNA: 3'- caggUGCG---AGGGUCUgUG----UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 123514 | 0.7 | 0.695894 |
Target: 5'- cGUCUGCGggUCCGGGCugguguggucguACAGGGUGGCc -3' miRNA: 3'- -CAGGUGCgaGGGUCUG------------UGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 70631 | 0.7 | 0.695894 |
Target: 5'- --gCGCaGCUCUCAgGACGCuAGGUGGCg -3' miRNA: 3'- cagGUG-CGAGGGU-CUGUGuUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 88364 | 0.7 | 0.705571 |
Target: 5'- uGUCguCGCUgCCCA---GCAAGGUGGCg -3' miRNA: 3'- -CAGguGCGA-GGGUcugUGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 62408 | 0.7 | 0.705571 |
Target: 5'- -gCCGCGgaUCCAG-CACcaGAGGUGGCg -3' miRNA: 3'- caGGUGCgaGGGUCuGUG--UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 138532 | 0.7 | 0.705571 |
Target: 5'- uGUUgGCGCUCgaaCGcGGCACGAgcGGCGGCg -3' miRNA: 3'- -CAGgUGCGAGg--GU-CUGUGUU--CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 148829 | 0.7 | 0.715189 |
Target: 5'- --aCAUGCccucgCUCGGcCACGAGGCGGCc -3' miRNA: 3'- cagGUGCGa----GGGUCuGUGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 121476 | 0.7 | 0.715189 |
Target: 5'- gGUCgGCGCgUCCgCGGGCGUgAAGGUGGCg -3' miRNA: 3'- -CAGgUGCG-AGG-GUCUGUG-UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 3641 | 0.7 | 0.715189 |
Target: 5'- cUCCGCGCUCuCCgAGugGCucGAGGCGa- -3' miRNA: 3'- cAGGUGCGAG-GG-UCugUG--UUCCGCcg -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 88695 | 0.7 | 0.724743 |
Target: 5'- cGUCCGCGUcguacaugacguUCUCGcGGCGCGA-GCGGCg -3' miRNA: 3'- -CAGGUGCG------------AGGGU-CUGUGUUcCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 147895 | 0.7 | 0.724743 |
Target: 5'- cGUCCGCGC-CgCCGGAUACGucagccGGGCGcaGCu -3' miRNA: 3'- -CAGGUGCGaG-GGUCUGUGU------UCCGC--CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 132320 | 0.69 | 0.743618 |
Target: 5'- cUCCugGacagCCCGGGCGgc-GGCGGCa -3' miRNA: 3'- cAGGugCga--GGGUCUGUguuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 55584 | 0.69 | 0.752925 |
Target: 5'- gGUCC-CGCcgUCGGACACGAGGaugGGCg -3' miRNA: 3'- -CAGGuGCGagGGUCUGUGUUCCg--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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