miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 55584 0.69 0.752925
Target:  5'- gGUCC-CGCcgUCGGACACGAGGaugGGCg -3'
miRNA:   3'- -CAGGuGCGagGGUCUGUGUUCCg--CCG- -5'
16202 5' -57.9 NC_004065.1 + 105542 0.69 0.752925
Target:  5'- aUCCGCGCggCCCuggacccGGCGCA--GCGGCa -3'
miRNA:   3'- cAGGUGCGa-GGGu------CUGUGUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 164739 0.69 0.752925
Target:  5'- cGUCgAUGCUUCUGGACGCc--GCGGCc -3'
miRNA:   3'- -CAGgUGCGAGGGUCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 191538 0.69 0.762132
Target:  5'- gGUCCACGU--CCAG-CA-AGGGCGGCu -3'
miRNA:   3'- -CAGGUGCGagGGUCuGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 151340 0.69 0.771233
Target:  5'- cGUUCAgauacuCGCUCUCGGGCGCc--GCGGCg -3'
miRNA:   3'- -CAGGU------GCGAGGGUCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 204529 0.69 0.771233
Target:  5'- -aCCGuCGUggUCgCCAGACGCcucgucGGGCGGCg -3'
miRNA:   3'- caGGU-GCG--AG-GGUCUGUGu-----UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 109767 0.69 0.771233
Target:  5'- uUCUACGCg-CCGGucaGCAGGGCaGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCug-UGUUCCG-CCG- -5'
16202 5' -57.9 NC_004065.1 + 158061 0.69 0.771233
Target:  5'- cUCCGgGCUgCCCGGcucCACc-GGCGGCg -3'
miRNA:   3'- cAGGUgCGA-GGGUCu--GUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 101506 0.69 0.779325
Target:  5'- cGUCgACGC-CgCGGAgGCAucgucgucgguggAGGCGGCa -3'
miRNA:   3'- -CAGgUGCGaGgGUCUgUGU-------------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 174607 0.69 0.780218
Target:  5'- -cCCGCGC-CCCGGACAgccCAucAGGcCGGUc -3'
miRNA:   3'- caGGUGCGaGGGUCUGU---GU--UCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 80130 0.69 0.780218
Target:  5'- gGUgCAgGUcgUCCCuGGCGCGgcagAGGCGGCu -3'
miRNA:   3'- -CAgGUgCG--AGGGuCUGUGU----UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 99540 0.69 0.780218
Target:  5'- gGUCgGCGCUCCCGucuCGCc--GCGGCg -3'
miRNA:   3'- -CAGgUGCGAGGGUcu-GUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 195030 0.69 0.780218
Target:  5'- -gCCGCGCUCguCCAuGAC-CAGGGCgcacGGCg -3'
miRNA:   3'- caGGUGCGAG--GGU-CUGuGUUCCG----CCG- -5'
16202 5' -57.9 NC_004065.1 + 103678 0.69 0.78908
Target:  5'- aUCCugGacaaCCCGGAgaccuaCACGguGGGCGGCg -3'
miRNA:   3'- cAGGugCga--GGGUCU------GUGU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 85156 0.69 0.78908
Target:  5'- aUCCA-GCUCCCAGACG--GGGaaGGCc -3'
miRNA:   3'- cAGGUgCGAGGGUCUGUguUCCg-CCG- -5'
16202 5' -57.9 NC_004065.1 + 42722 0.68 0.806403
Target:  5'- cUCCucCGC-CCCAGugauCGCAGcgcGGCGGCc -3'
miRNA:   3'- cAGGu-GCGaGGGUCu---GUGUU---CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 44516 0.68 0.806403
Target:  5'- cGUCCggcgGCGCgauguuaCCGGGgACGGuGGCGGCg -3'
miRNA:   3'- -CAGG----UGCGag-----GGUCUgUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 71650 0.68 0.814849
Target:  5'- cGUCCGCGggacgaagggcCUCCuCAGcaGCAgCAGcGGCGGCg -3'
miRNA:   3'- -CAGGUGC-----------GAGG-GUC--UGU-GUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 75758 0.68 0.814849
Target:  5'- -cCCAgCGCUgaCCCGGGgGaggcgGAGGCGGCg -3'
miRNA:   3'- caGGU-GCGA--GGGUCUgUg----UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 187394 0.68 0.814849
Target:  5'- gGUCCAcCGuCUCUCGGACACGu-GCGaGCu -3'
miRNA:   3'- -CAGGU-GC-GAGGGUCUGUGUucCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.