Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 130056 | 0.66 | 0.914097 |
Target: 5'- -cCCGCGg-CCCGaGCACGccGCGGCg -3' miRNA: 3'- caGGUGCgaGGGUcUGUGUucCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 59757 | 0.66 | 0.914097 |
Target: 5'- -aCCGCGUggCCgauGGugGCGGcGGCGGCc -3' miRNA: 3'- caGGUGCGagGG---UCugUGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 116713 | 0.66 | 0.914097 |
Target: 5'- aUCC-CGCgUCCGGcGCGCGA-GCGGCg -3' miRNA: 3'- cAGGuGCGaGGGUC-UGUGUUcCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 229531 | 0.66 | 0.914097 |
Target: 5'- -cCCGCcUUCCgCGGACGCGGcGcGCGGCc -3' miRNA: 3'- caGGUGcGAGG-GUCUGUGUU-C-CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 115036 | 0.66 | 0.914097 |
Target: 5'- aUCCGCGCggccgCCaGGGC-CGAGGgcaaCGGCg -3' miRNA: 3'- cAGGUGCGa----GGgUCUGuGUUCC----GCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 113889 | 0.66 | 0.914097 |
Target: 5'- gGUUCGCgGCUCuuacgCCGGACGagAGGGCGGa -3' miRNA: 3'- -CAGGUG-CGAG-----GGUCUGUg-UUCCGCCg -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 199529 | 0.66 | 0.914097 |
Target: 5'- cGUgCGCGCagCCGGGCGCcuccagccGGGCGcGCc -3' miRNA: 3'- -CAgGUGCGagGGUCUGUGu-------UCCGC-CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 73281 | 0.66 | 0.914097 |
Target: 5'- aUCCAccCGUUCCgAGcccugucuaGCGCGAucauGGCGGCg -3' miRNA: 3'- cAGGU--GCGAGGgUC---------UGUGUU----CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 202503 | 0.66 | 0.914097 |
Target: 5'- aUCCGgGUgaccacaCCCAGACAgaucaGAGGCGcGCu -3' miRNA: 3'- cAGGUgCGa------GGGUCUGUg----UUCCGC-CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 124935 | 0.66 | 0.914097 |
Target: 5'- -aCCACGCgcaCCAGGuuCGCGuuGcGCGGCa -3' miRNA: 3'- caGGUGCGag-GGUCU--GUGUu-C-CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 65286 | 0.66 | 0.912392 |
Target: 5'- -gCCGCgGCgUCCAGAagcaucgacgaguuCAgCGAGGCGGCg -3' miRNA: 3'- caGGUG-CGaGGGUCU--------------GU-GUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 131380 | 0.66 | 0.910666 |
Target: 5'- -aCCGCGCguacguacgagcgaCCgAGcGCACcgAAGGCGGCg -3' miRNA: 3'- caGGUGCGa-------------GGgUC-UGUG--UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 130511 | 0.66 | 0.910666 |
Target: 5'- -gCCGCGCgUCCUccucgugcgcgccagGGACccCAAcGGCGGCa -3' miRNA: 3'- caGGUGCG-AGGG---------------UCUGu-GUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 127116 | 0.66 | 0.908336 |
Target: 5'- cGUCCAguuCUCCCccauCGCGGcGGCGGCg -3' miRNA: 3'- -CAGGUgc-GAGGGucu-GUGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 72699 | 0.66 | 0.908336 |
Target: 5'- -gCCGaGCgaCCCGGACuucguCAAGGUGGUg -3' miRNA: 3'- caGGUgCGa-GGGUCUGu----GUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 121529 | 0.66 | 0.908336 |
Target: 5'- uGUCCGgGUgccgguacaucuUCCCcacacacaGGACGCAGGGCGccuGCg -3' miRNA: 3'- -CAGGUgCG------------AGGG--------UCUGUGUUCCGC---CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 4658 | 0.66 | 0.908336 |
Target: 5'- -cCCGcCGCgggcgUCCAGAgACAGaggacuccGGCGGCg -3' miRNA: 3'- caGGU-GCGa----GGGUCUgUGUU--------CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 194766 | 0.66 | 0.908336 |
Target: 5'- cGUCuCGCGCcgUCCCgAGACcgggucgcGCAGGGCGa- -3' miRNA: 3'- -CAG-GUGCG--AGGG-UCUG--------UGUUCCGCcg -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 149682 | 0.66 | 0.907748 |
Target: 5'- gGUCCACgGUUCCCAGAacuCAguaugaaAGGCGuCg -3' miRNA: 3'- -CAGGUG-CGAGGGUCUgu-GU-------UCCGCcG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 164129 | 0.66 | 0.902356 |
Target: 5'- uUCCAgGCg-CCGcGGCAuCAgcAGGCGGCa -3' miRNA: 3'- cAGGUgCGagGGU-CUGU-GU--UCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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