miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 63036 0.66 0.902356
Target:  5'- uGUCCACaCguaaCCU--GCugGGGGCGGCg -3'
miRNA:   3'- -CAGGUGcGa---GGGucUGugUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 164129 0.66 0.902356
Target:  5'- uUCCAgGCg-CCGcGGCAuCAgcAGGCGGCa -3'
miRNA:   3'- cAGGUgCGagGGU-CUGU-GU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 122147 0.66 0.902356
Target:  5'- cGUCCGUGauCUgCCGGAUcaugacgaACAGGGCGGUg -3'
miRNA:   3'- -CAGGUGC--GAgGGUCUG--------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 195649 0.66 0.902356
Target:  5'- -gCCuCGcCUCCCGGcagccgagcgGCGgAGGGUGGCg -3'
miRNA:   3'- caGGuGC-GAGGGUC----------UGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 197794 0.66 0.902356
Target:  5'- uGUCCGCGUuggUCaCCAG-CGCcc-GCGGCg -3'
miRNA:   3'- -CAGGUGCG---AG-GGUCuGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 37124 0.66 0.902356
Target:  5'- -cCCcCGCUCCgCAGAUccgcaguuGCAGugucaacaucGGCGGCa -3'
miRNA:   3'- caGGuGCGAGG-GUCUG--------UGUU----------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 99076 0.66 0.902356
Target:  5'- -cUCGCGCg-CUAGACACGAGaagucucgggcGCGGCc -3'
miRNA:   3'- caGGUGCGagGGUCUGUGUUC-----------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 197836 0.66 0.902356
Target:  5'- cGUCCAgG-UCCCAG-----GGGCGGCa -3'
miRNA:   3'- -CAGGUgCgAGGGUCuguguUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 43122 0.66 0.901746
Target:  5'- aUCCGCGCUCgcgaagaccgCCGGccgcggaagacacGCGCAcGGaCGGCg -3'
miRNA:   3'- cAGGUGCGAG----------GGUC-------------UGUGUuCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 56092 0.66 0.900519
Target:  5'- gGUUCugcuCGCagcagacgugaccgUCCCGGACGac-GGCGGCg -3'
miRNA:   3'- -CAGGu---GCG--------------AGGGUCUGUguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 166540 0.66 0.89616
Target:  5'- -aCCugGCUgCgCGacGGCGCcuGGCGGCu -3'
miRNA:   3'- caGGugCGAgG-GU--CUGUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 223937 0.66 0.89616
Target:  5'- cGUCCGCaUUCUCuGACGCcacGCGGCg -3'
miRNA:   3'- -CAGGUGcGAGGGuCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 18235 0.66 0.892339
Target:  5'- -cCCGCGCcucuccggagucgucUCCC-GACugGAGGCGucGCu -3'
miRNA:   3'- caGGUGCG---------------AGGGuCUGugUUCCGC--CG- -5'
16202 5' -57.9 NC_004065.1 + 122839 0.66 0.889749
Target:  5'- aGUCgACgGCUCCCGucucGAcCGCccucuGGCGGCa -3'
miRNA:   3'- -CAGgUG-CGAGGGU----CU-GUGuu---CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120420 0.66 0.889749
Target:  5'- -aCCGCGg-CCCGGGgGuCGAGcGCGGCc -3'
miRNA:   3'- caGGUGCgaGGGUCUgU-GUUC-CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 22035 0.66 0.889749
Target:  5'- -gCCACgGC-CCCGGGCAgGccGCGGUa -3'
miRNA:   3'- caGGUG-CGaGGGUCUGUgUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 136420 0.66 0.889749
Target:  5'- gGUCCugGgggCCCGGugAgcCGAGGuCGGUa -3'
miRNA:   3'- -CAGGugCga-GGGUCugU--GUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 163237 0.66 0.889749
Target:  5'- cGUCCGCucauGUUUCgucGGCGCAGcGGCGGCg -3'
miRNA:   3'- -CAGGUG----CGAGGgu-CUGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88162 0.67 0.883129
Target:  5'- -gCC-CGCUCgCCGGACGagcGGCGGa -3'
miRNA:   3'- caGGuGCGAG-GGUCUGUguuCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 201078 0.67 0.883129
Target:  5'- -cCCGC-CUCCgGcGACG-GAGGCGGCg -3'
miRNA:   3'- caGGUGcGAGGgU-CUGUgUUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.