miRNA display CGI


Results 41 - 60 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 30055 0.67 0.883129
Target:  5'- cUCgGCGCucgaUCCCAGAgACGGGaccgccGUGGCg -3'
miRNA:   3'- cAGgUGCG----AGGGUCUgUGUUC------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 155221 0.67 0.883129
Target:  5'- cUCCACGCUCgUCAGcaucuuGCGCGAGcGCuGCc -3'
miRNA:   3'- cAGGUGCGAG-GGUC------UGUGUUC-CGcCG- -5'
16202 5' -57.9 NC_004065.1 + 40140 0.67 0.883129
Target:  5'- cUCCGCGCUCgUgAGACGCugccgacGGCaGCa -3'
miRNA:   3'- cAGGUGCGAG-GgUCUGUGuu-----CCGcCG- -5'
16202 5' -57.9 NC_004065.1 + 38701 0.67 0.883129
Target:  5'- cUUCAUGgaCaUCAGAUACGcgaAGGCGGCa -3'
miRNA:   3'- cAGGUGCgaG-GGUCUGUGU---UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 110583 0.67 0.883129
Target:  5'- uGUCCaucACGCUgCCCAaGCACAGGGUccugacccucGGUc -3'
miRNA:   3'- -CAGG---UGCGA-GGGUcUGUGUUCCG----------CCG- -5'
16202 5' -57.9 NC_004065.1 + 122444 0.67 0.883129
Target:  5'- cGUCgAuCGUgaUCUCGGGCAggguCAGGGUGGCg -3'
miRNA:   3'- -CAGgU-GCG--AGGGUCUGU----GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 92145 0.67 0.883129
Target:  5'- --gCGCGCUgaagaucaCCCcGACGCugucGGCGGCg -3'
miRNA:   3'- cagGUGCGA--------GGGuCUGUGuu--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 192843 0.67 0.883129
Target:  5'- --gC-CGCUCUCGGugAC--GGCGGCg -3'
miRNA:   3'- cagGuGCGAGGGUCugUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88162 0.67 0.883129
Target:  5'- -gCC-CGCUCgCCGGACGagcGGCGGa -3'
miRNA:   3'- caGGuGCGAG-GGUCUGUguuCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 76519 0.67 0.883129
Target:  5'- -gCCACGCUCuCCAGAC-CGAuGCccugacucuuGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUUcCG----------CCG- -5'
16202 5' -57.9 NC_004065.1 + 225150 0.67 0.882456
Target:  5'- ---gACGCUCCUccugGGugACcgagccgAGGGCGGCg -3'
miRNA:   3'- caggUGCGAGGG----UCugUG-------UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 130677 0.67 0.876302
Target:  5'- -gCCaACGCUCgUCGGGCGagGAGGCGGa -3'
miRNA:   3'- caGG-UGCGAG-GGUCUGUg-UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 211925 0.67 0.876302
Target:  5'- uUCCGCGacagagaUgCCGGcCACGAGGCugcGGCg -3'
miRNA:   3'- cAGGUGCg------AgGGUCuGUGUUCCG---CCG- -5'
16202 5' -57.9 NC_004065.1 + 83446 0.67 0.876302
Target:  5'- -gCCGgGCUCC--GGCACGA-GCGGCa -3'
miRNA:   3'- caGGUgCGAGGguCUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 155132 0.67 0.876302
Target:  5'- cUCCGCGC-CCgCGagUACGAGGuCGGCu -3'
miRNA:   3'- cAGGUGCGaGG-GUcuGUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 86496 0.67 0.876302
Target:  5'- uGUCCcC-CUCCCAGACGuCGAGGaCGcuGCu -3'
miRNA:   3'- -CAGGuGcGAGGGUCUGU-GUUCC-GC--CG- -5'
16202 5' -57.9 NC_004065.1 + 146780 0.67 0.876302
Target:  5'- -cCUACGCcaCCCAGACcgccguGCAGuaugcuccucccGGCGGCg -3'
miRNA:   3'- caGGUGCGa-GGGUCUG------UGUU------------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 74138 0.67 0.869273
Target:  5'- cGUCgAgGCgggugCCCGGGC-CGagaaccccgcAGGCGGCg -3'
miRNA:   3'- -CAGgUgCGa----GGGUCUGuGU----------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 170343 0.67 0.868559
Target:  5'- uUCUACGacgaCUCGGACgacgaggACGAGGUGGCg -3'
miRNA:   3'- cAGGUGCga--GGGUCUG-------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 199259 0.67 0.864234
Target:  5'- cGUCCGCGUccgccgaccucggauUCCgAGGgcagccuCugAAGGUGGCg -3'
miRNA:   3'- -CAGGUGCG---------------AGGgUCU-------GugUUCCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.