miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 122042 0.67 0.862046
Target:  5'- uGUUCACGUUCaacuuCCAGG-ACGGGGaCGGCu -3'
miRNA:   3'- -CAGGUGCGAG-----GGUCUgUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 71320 0.67 0.854626
Target:  5'- cUCCuCGCUCCUguuGGGCAUc--GCGGCg -3'
miRNA:   3'- cAGGuGCGAGGG---UCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 49638 0.67 0.852364
Target:  5'- cGUCCAguUGC-CCCAGACGguggaccaguuuccCGuGGCGGUg -3'
miRNA:   3'- -CAGGU--GCGaGGGUCUGU--------------GUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 124518 0.67 0.84702
Target:  5'- cUgCGCGUUCUCGGGCACGugcgccaccAGGUGGa -3'
miRNA:   3'- cAgGUGCGAGGGUCUGUGU---------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 132388 0.68 0.839232
Target:  5'- -aCCgGCGuCUCCguGcCGCAAgGGCGGCu -3'
miRNA:   3'- caGG-UGC-GAGGguCuGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 101581 0.68 0.839232
Target:  5'- --aCACGUaUUCGGACAgggaGAGGCGGCg -3'
miRNA:   3'- cagGUGCGaGGGUCUGUg---UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 169105 0.68 0.839232
Target:  5'- -gCCACG-UCCugaCAGACGCGGGccGCGGCc -3'
miRNA:   3'- caGGUGCgAGG---GUCUGUGUUC--CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 22839 0.68 0.839232
Target:  5'- -cCCACGCUCaaaaCGuGCGCGAGGUucacGGCc -3'
miRNA:   3'- caGGUGCGAGg---GUcUGUGUUCCG----CCG- -5'
16202 5' -57.9 NC_004065.1 + 193142 0.68 0.83127
Target:  5'- uGUCCGCG-UCa-GGACGCcugcugcuGGGCGGCg -3'
miRNA:   3'- -CAGGUGCgAGggUCUGUGu-------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 194353 0.68 0.83127
Target:  5'- cUCCugGCUCgCGagcgacGugGCGAucGGCGGCc -3'
miRNA:   3'- cAGGugCGAGgGU------CugUGUU--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 212036 0.68 0.82314
Target:  5'- cUCCA-GCUCCCcGACACccaaGAGgucgcGCGGCa -3'
miRNA:   3'- cAGGUgCGAGGGuCUGUG----UUC-----CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 157913 0.68 0.818184
Target:  5'- cGUCCAcCGUccuccugUCCAGucuggcgaucaggccGCGCAGGGUGGCg -3'
miRNA:   3'- -CAGGU-GCGa------GGGUC---------------UGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 30571 0.68 0.814849
Target:  5'- cGUCCGCGacuucgcgUCCCAG-CugG-GGUGGCu -3'
miRNA:   3'- -CAGGUGCg-------AGGGUCuGugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 613 0.68 0.814849
Target:  5'- -gUUACGCgCUCAGGCuCGucAGGCGGCg -3'
miRNA:   3'- caGGUGCGaGGGUCUGuGU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 112620 0.68 0.814849
Target:  5'- cUCCGCGCcgcgagCCCAG-CGCGc-GCGGCc -3'
miRNA:   3'- cAGGUGCGa-----GGGUCuGUGUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 71650 0.68 0.814849
Target:  5'- cGUCCGCGggacgaagggcCUCCuCAGcaGCAgCAGcGGCGGCg -3'
miRNA:   3'- -CAGGUGC-----------GAGG-GUC--UGU-GUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 7148 0.68 0.814849
Target:  5'- aUCCACGUcgCCGGuuuCACGGGGaUGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCu--GUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 99930 0.68 0.814849
Target:  5'- cGUCCAUGacgCCGGACcgccGCGGcGGCGGCu -3'
miRNA:   3'- -CAGGUGCgagGGUCUG----UGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 75758 0.68 0.814849
Target:  5'- -cCCAgCGCUgaCCCGGGgGaggcgGAGGCGGCg -3'
miRNA:   3'- caGGU-GCGA--GGGUCUgUg----UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 187394 0.68 0.814849
Target:  5'- gGUCCAcCGuCUCUCGGACACGu-GCGaGCu -3'
miRNA:   3'- -CAGGU-GC-GAGGGUCUGUGUucCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.