miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 613 0.68 0.814849
Target:  5'- -gUUACGCgCUCAGGCuCGucAGGCGGCg -3'
miRNA:   3'- caGGUGCGaGGGUCUGuGU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3140 0.72 0.597681
Target:  5'- uUCCGCGgUCCCGGGC-CAAGuuucuaccucaaGUGGCa -3'
miRNA:   3'- cAGGUGCgAGGGUCUGuGUUC------------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3641 0.7 0.715189
Target:  5'- cUCCGCGCUCuCCgAGugGCucGAGGCGa- -3'
miRNA:   3'- cAGGUGCGAG-GG-UCugUG--UUCCGCcg -5'
16202 5' -57.9 NC_004065.1 + 4658 0.66 0.908336
Target:  5'- -cCCGcCGCgggcgUCCAGAgACAGaggacuccGGCGGCg -3'
miRNA:   3'- caGGU-GCGa----GGGUCUgUGUU--------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 5786 0.74 0.483195
Target:  5'- cUCC-CGCUCgCCGGGCGCAggaggaaaaaaAGGCGGa -3'
miRNA:   3'- cAGGuGCGAG-GGUCUGUGU-----------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 7148 0.68 0.814849
Target:  5'- aUCCACGUcgCCGGuuuCACGGGGaUGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCu--GUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 18235 0.66 0.892339
Target:  5'- -cCCGCGCcucuccggagucgucUCCC-GACugGAGGCGucGCu -3'
miRNA:   3'- caGGUGCG---------------AGGGuCUGugUUCCGC--CG- -5'
16202 5' -57.9 NC_004065.1 + 22035 0.66 0.889749
Target:  5'- -gCCACgGC-CCCGGGCAgGccGCGGUa -3'
miRNA:   3'- caGGUG-CGaGGGUCUGUgUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 22839 0.68 0.839232
Target:  5'- -cCCACGCUCaaaaCGuGCGCGAGGUucacGGCc -3'
miRNA:   3'- caGGUGCGAGg---GUcUGUGUUCCG----CCG- -5'
16202 5' -57.9 NC_004065.1 + 29080 0.74 0.483195
Target:  5'- -gCCGCGCUCCCu-GCGCuccGAGGCGGa -3'
miRNA:   3'- caGGUGCGAGGGucUGUG---UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 29567 0.73 0.520394
Target:  5'- -gCCGCGCUCCCGcuauCugAcGGCGGCc -3'
miRNA:   3'- caGGUGCGAGGGUcu--GugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 30055 0.67 0.883129
Target:  5'- cUCgGCGCucgaUCCCAGAgACGGGaccgccGUGGCg -3'
miRNA:   3'- cAGgUGCG----AGGGUCUgUGUUC------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 30571 0.68 0.814849
Target:  5'- cGUCCGCGacuucgcgUCCCAG-CugG-GGUGGCu -3'
miRNA:   3'- -CAGGUGCg-------AGGGUCuGugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 30604 0.69 0.752925
Target:  5'- cGUCCGCGUUCCgAGGCAgCGAcGCGuGUc -3'
miRNA:   3'- -CAGGUGCGAGGgUCUGU-GUUcCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 35978 0.68 0.814849
Target:  5'- cGUCCGCGC-CauGGACAUguucGAcGGCGGCa -3'
miRNA:   3'- -CAGGUGCGaGggUCUGUG----UU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 37124 0.66 0.902356
Target:  5'- -cCCcCGCUCCgCAGAUccgcaguuGCAGugucaacaucGGCGGCa -3'
miRNA:   3'- caGGuGCGAGG-GUCUG--------UGUU----------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 38701 0.67 0.883129
Target:  5'- cUUCAUGgaCaUCAGAUACGcgaAGGCGGCa -3'
miRNA:   3'- cAGGUGCgaG-GGUCUGUGU---UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 40140 0.67 0.883129
Target:  5'- cUCCGCGCUCgUgAGACGCugccgacGGCaGCa -3'
miRNA:   3'- cAGGUGCGAG-GgUCUGUGuu-----CCGcCG- -5'
16202 5' -57.9 NC_004065.1 + 42722 0.68 0.806403
Target:  5'- cUCCucCGC-CCCAGugauCGCAGcgcGGCGGCc -3'
miRNA:   3'- cAGGu-GCGaGGGUCu---GUGUU---CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 43122 0.66 0.901746
Target:  5'- aUCCGCGCUCgcgaagaccgCCGGccgcggaagacacGCGCAcGGaCGGCg -3'
miRNA:   3'- cAGGUGCGAG----------GGUC-------------UGUGUuCC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.