miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 44516 0.68 0.806403
Target:  5'- cGUCCggcgGCGCgauguuaCCGGGgACGGuGGCGGCg -3'
miRNA:   3'- -CAGG----UGCGag-----GGUCUgUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 45526 0.74 0.510983
Target:  5'- gGUCUACGCcaCCCGGcgcCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUGCGa-GGGUCu--GUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 49638 0.67 0.852364
Target:  5'- cGUCCAguUGC-CCCAGACGguggaccaguuuccCGuGGCGGUg -3'
miRNA:   3'- -CAGGU--GCGaGGGUCUGU--------------GUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 50905 0.71 0.637071
Target:  5'- cUCCAcCGC-CaCCAGGCACGGGGUucacgGGCa -3'
miRNA:   3'- cAGGU-GCGaG-GGUCUGUGUUCCG-----CCG- -5'
16202 5' -57.9 NC_004065.1 + 55584 0.69 0.752925
Target:  5'- gGUCC-CGCcgUCGGACACGAGGaugGGCg -3'
miRNA:   3'- -CAGGuGCGagGGUCUGUGUUCCg--CCG- -5'
16202 5' -57.9 NC_004065.1 + 56092 0.66 0.900519
Target:  5'- gGUUCugcuCGCagcagacgugaccgUCCCGGACGac-GGCGGCg -3'
miRNA:   3'- -CAGGu---GCG--------------AGGGUCUGUguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 59757 0.66 0.914097
Target:  5'- -aCCGCGUggCCgauGGugGCGGcGGCGGCc -3'
miRNA:   3'- caGGUGCGagGG---UCugUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 62408 0.7 0.705571
Target:  5'- -gCCGCGgaUCCAG-CACcaGAGGUGGCg -3'
miRNA:   3'- caGGUGCgaGGGUCuGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 63036 0.66 0.902356
Target:  5'- uGUCCACaCguaaCCU--GCugGGGGCGGCg -3'
miRNA:   3'- -CAGGUGcGa---GGGucUGugUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 65286 0.66 0.912392
Target:  5'- -gCCGCgGCgUCCAGAagcaucgacgaguuCAgCGAGGCGGCg -3'
miRNA:   3'- caGGUG-CGaGGGUCU--------------GU-GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 68520 0.7 0.695894
Target:  5'- ---gACGCaucUCCCGGAgGCcgagGAGGCGGCg -3'
miRNA:   3'- caggUGCG---AGGGUCUgUG----UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 70631 0.7 0.695894
Target:  5'- --gCGCaGCUCUCAgGACGCuAGGUGGCg -3'
miRNA:   3'- cagGUG-CGAGGGU-CUGUGuUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 71320 0.67 0.854626
Target:  5'- cUCCuCGCUCCUguuGGGCAUc--GCGGCg -3'
miRNA:   3'- cAGGuGCGAGGG---UCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 71650 0.68 0.814849
Target:  5'- cGUCCGCGggacgaagggcCUCCuCAGcaGCAgCAGcGGCGGCg -3'
miRNA:   3'- -CAGGUGC-----------GAGG-GUC--UGU-GUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 72699 0.66 0.908336
Target:  5'- -gCCGaGCgaCCCGGACuucguCAAGGUGGUg -3'
miRNA:   3'- caGGUgCGa-GGGUCUGu----GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 73281 0.66 0.914097
Target:  5'- aUCCAccCGUUCCgAGcccugucuaGCGCGAucauGGCGGCg -3'
miRNA:   3'- cAGGU--GCGAGGgUC---------UGUGUU----CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 74138 0.67 0.869273
Target:  5'- cGUCgAgGCgggugCCCGGGC-CGagaaccccgcAGGCGGCg -3'
miRNA:   3'- -CAGgUgCGa----GGGUCUGuGU----------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 75758 0.68 0.814849
Target:  5'- -cCCAgCGCUgaCCCGGGgGaggcgGAGGCGGCg -3'
miRNA:   3'- caGGU-GCGA--GGGUCUgUg----UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 76519 0.67 0.883129
Target:  5'- -gCCACGCUCuCCAGAC-CGAuGCccugacucuuGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUUcCG----------CCG- -5'
16202 5' -57.9 NC_004065.1 + 79569 0.72 0.587875
Target:  5'- -gCgGCGCUUCCuGGC-CGAGGUGGCc -3'
miRNA:   3'- caGgUGCGAGGGuCUGuGUUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.