miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 80130 0.69 0.780218
Target:  5'- gGUgCAgGUcgUCCCuGGCGCGgcagAGGCGGCu -3'
miRNA:   3'- -CAgGUgCG--AGGGuCUGUGU----UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 83165 0.72 0.576149
Target:  5'- cGUUCACGCgccgaugcagaCCAGGCGCucccGGCGGCc -3'
miRNA:   3'- -CAGGUGCGag---------GGUCUGUGuu--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 83446 0.67 0.876302
Target:  5'- -gCCGgGCUCC--GGCACGA-GCGGCa -3'
miRNA:   3'- caGGUgCGAGGguCUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 85156 0.69 0.78908
Target:  5'- aUCCA-GCUCCCAGACG--GGGaaGGCc -3'
miRNA:   3'- cAGGUgCGAGGGUCUGUguUCCg-CCG- -5'
16202 5' -57.9 NC_004065.1 + 86496 0.67 0.876302
Target:  5'- uGUCCcC-CUCCCAGACGuCGAGGaCGcuGCu -3'
miRNA:   3'- -CAGGuGcGAGGGUCUGU-GUUCC-GC--CG- -5'
16202 5' -57.9 NC_004065.1 + 88162 0.67 0.883129
Target:  5'- -gCC-CGCUCgCCGGACGagcGGCGGa -3'
miRNA:   3'- caGGuGCGAG-GGUCUGUguuCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 88364 0.7 0.705571
Target:  5'- uGUCguCGCUgCCCA---GCAAGGUGGCg -3'
miRNA:   3'- -CAGguGCGA-GGGUcugUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88525 0.75 0.418874
Target:  5'- uGUCCGCGCUCguccaggacccugaCCAGGCAgAAaGCGGCc -3'
miRNA:   3'- -CAGGUGCGAG--------------GGUCUGUgUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88695 0.7 0.724743
Target:  5'- cGUCCGCGUcguacaugacguUCUCGcGGCGCGA-GCGGCg -3'
miRNA:   3'- -CAGGUGCG------------AGGGU-CUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 92145 0.67 0.883129
Target:  5'- --gCGCGCUgaagaucaCCCcGACGCugucGGCGGCg -3'
miRNA:   3'- cagGUGCGA--------GGGuCUGUGuu--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 96238 0.73 0.572251
Target:  5'- cUCCGCGuCUCCCGGcucguggucgaggauGCggauggacgGCGGGGCGGCc -3'
miRNA:   3'- cAGGUGC-GAGGGUC---------------UG---------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 99076 0.66 0.902356
Target:  5'- -cUCGCGCg-CUAGACACGAGaagucucgggcGCGGCc -3'
miRNA:   3'- caGGUGCGagGGUCUGUGUUC-----------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 99540 0.69 0.780218
Target:  5'- gGUCgGCGCUCCCGucuCGCc--GCGGCg -3'
miRNA:   3'- -CAGgUGCGAGGGUcu-GUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 99930 0.68 0.814849
Target:  5'- cGUCCAUGacgCCGGACcgccGCGGcGGCGGCu -3'
miRNA:   3'- -CAGGUGCgagGGUCUG----UGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 101506 0.69 0.779325
Target:  5'- cGUCgACGC-CgCGGAgGCAucgucgucgguggAGGCGGCa -3'
miRNA:   3'- -CAGgUGCGaGgGUCUgUGU-------------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 101581 0.68 0.839232
Target:  5'- --aCACGUaUUCGGACAgggaGAGGCGGCg -3'
miRNA:   3'- cagGUGCGaGGGUCUGUg---UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 101592 0.71 0.646927
Target:  5'- cUCCGcCGCgCUCAGACuCGGuGGCGGCg -3'
miRNA:   3'- cAGGU-GCGaGGGUCUGuGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 103678 0.69 0.78908
Target:  5'- aUCCugGacaaCCCGGAgaccuaCACGguGGGCGGCg -3'
miRNA:   3'- cAGGugCga--GGGUCU------GUGU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 105542 0.69 0.752925
Target:  5'- aUCCGCGCggCCCuggacccGGCGCA--GCGGCa -3'
miRNA:   3'- cAGGUGCGa-GGGu------CUGUGUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 109767 0.69 0.771233
Target:  5'- uUCUACGCg-CCGGucaGCAGGGCaGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCug-UGUUCCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.