miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 110583 0.67 0.883129
Target:  5'- uGUCCaucACGCUgCCCAaGCACAGGGUccugacccucGGUc -3'
miRNA:   3'- -CAGG---UGCGA-GGGUcUGUGUUCCG----------CCG- -5'
16202 5' -57.9 NC_004065.1 + 112620 0.68 0.814849
Target:  5'- cUCCGCGCcgcgagCCCAG-CGCGc-GCGGCc -3'
miRNA:   3'- cAGGUGCGa-----GGGUCuGUGUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 113889 0.66 0.914097
Target:  5'- gGUUCGCgGCUCuuacgCCGGACGagAGGGCGGa -3'
miRNA:   3'- -CAGGUG-CGAG-----GGUCUGUg-UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 115036 0.66 0.914097
Target:  5'- aUCCGCGCggccgCCaGGGC-CGAGGgcaaCGGCg -3'
miRNA:   3'- cAGGUGCGa----GGgUCUGuGUUCC----GCCG- -5'
16202 5' -57.9 NC_004065.1 + 115783 0.72 0.607509
Target:  5'- gGUUgGCGgUCCCGGGCACGGaaacuGCGGCc -3'
miRNA:   3'- -CAGgUGCgAGGGUCUGUGUUc----CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 116713 0.66 0.914097
Target:  5'- aUCC-CGCgUCCGGcGCGCGA-GCGGCg -3'
miRNA:   3'- cAGGuGCGaGGGUC-UGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120093 0.71 0.656773
Target:  5'- -cUCAUGacCUCCCgGGACGCGAcGGCGGCc -3'
miRNA:   3'- caGGUGC--GAGGG-UCUGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120420 0.66 0.889749
Target:  5'- -aCCGCGg-CCCGGGgGuCGAGcGCGGCc -3'
miRNA:   3'- caGGUGCgaGGGUCUgU-GUUC-CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120874 0.72 0.617355
Target:  5'- -aCCG-GCUugCCCGGGguCAGGGCGGCg -3'
miRNA:   3'- caGGUgCGA--GGGUCUguGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 121476 0.7 0.715189
Target:  5'- gGUCgGCGCgUCCgCGGGCGUgAAGGUGGCg -3'
miRNA:   3'- -CAGgUGCG-AGG-GUCUGUG-UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 121529 0.66 0.908336
Target:  5'- uGUCCGgGUgccgguacaucuUCCCcacacacaGGACGCAGGGCGccuGCg -3'
miRNA:   3'- -CAGGUgCG------------AGGG--------UCUGUGUUCCGC---CG- -5'
16202 5' -57.9 NC_004065.1 + 122042 0.67 0.862046
Target:  5'- uGUUCACGUUCaacuuCCAGG-ACGGGGaCGGCu -3'
miRNA:   3'- -CAGGUGCGAG-----GGUCUgUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 122147 0.66 0.902356
Target:  5'- cGUCCGUGauCUgCCGGAUcaugacgaACAGGGCGGUg -3'
miRNA:   3'- -CAGGUGC--GAgGGUCUG--------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 122444 0.67 0.883129
Target:  5'- cGUCgAuCGUgaUCUCGGGCAggguCAGGGUGGCg -3'
miRNA:   3'- -CAGgU-GCG--AGGGUCUGU----GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 122839 0.66 0.889749
Target:  5'- aGUCgACgGCUCCCGucucGAcCGCccucuGGCGGCa -3'
miRNA:   3'- -CAGgUG-CGAGGGU----CU-GUGuu---CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 123514 0.7 0.695894
Target:  5'- cGUCUGCGggUCCGGGCugguguggucguACAGGGUGGCc -3'
miRNA:   3'- -CAGGUGCgaGGGUCUG------------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 124518 0.67 0.84702
Target:  5'- cUgCGCGUUCUCGGGCACGugcgccaccAGGUGGa -3'
miRNA:   3'- cAgGUGCGAGGGUCUGUGU---------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 124935 0.66 0.914097
Target:  5'- -aCCACGCgcaCCAGGuuCGCGuuGcGCGGCa -3'
miRNA:   3'- caGGUGCGag-GGUCU--GUGUu-C-CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127116 0.66 0.908336
Target:  5'- cGUCCAguuCUCCCccauCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUgc-GAGGGucu-GUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127639 0.71 0.637071
Target:  5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3'
miRNA:   3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.