miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 229531 0.66 0.914097
Target:  5'- -cCCGCcUUCCgCGGACGCGGcGcGCGGCc -3'
miRNA:   3'- caGGUGcGAGG-GUCUGUGUU-C-CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 225150 0.67 0.882456
Target:  5'- ---gACGCUCCUccugGGugACcgagccgAGGGCGGCg -3'
miRNA:   3'- caggUGCGAGGG----UCugUG-------UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 223937 0.66 0.89616
Target:  5'- cGUCCGCaUUCUCuGACGCcacGCGGCg -3'
miRNA:   3'- -CAGGUGcGAGGGuCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 212036 0.68 0.82314
Target:  5'- cUCCA-GCUCCCcGACACccaaGAGgucgcGCGGCa -3'
miRNA:   3'- cAGGUgCGAGGGuCUGUG----UUC-----CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 211925 0.67 0.876302
Target:  5'- uUCCGCGacagagaUgCCGGcCACGAGGCugcGGCg -3'
miRNA:   3'- cAGGUGCg------AgGGUCuGUGUUCCG---CCG- -5'
16202 5' -57.9 NC_004065.1 + 204529 0.69 0.771233
Target:  5'- -aCCGuCGUggUCgCCAGACGCcucgucGGGCGGCg -3'
miRNA:   3'- caGGU-GCG--AG-GGUCUGUGu-----UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 202503 0.66 0.914097
Target:  5'- aUCCGgGUgaccacaCCCAGACAgaucaGAGGCGcGCu -3'
miRNA:   3'- cAGGUgCGa------GGGUCUGUg----UUCCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 201191 0.66 0.902356
Target:  5'- -gCgGCGCgUCCCGG-Cuc-GGGCGGCg -3'
miRNA:   3'- caGgUGCG-AGGGUCuGuguUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 201078 0.67 0.883129
Target:  5'- -cCCGC-CUCCgGcGACG-GAGGCGGCg -3'
miRNA:   3'- caGGUGcGAGGgU-CUGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 199529 0.66 0.914097
Target:  5'- cGUgCGCGCagCCGGGCGCcuccagccGGGCGcGCc -3'
miRNA:   3'- -CAgGUGCGagGGUCUGUGu-------UCCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 199259 0.67 0.864234
Target:  5'- cGUCCGCGUccgccgaccucggauUCCgAGGgcagccuCugAAGGUGGCg -3'
miRNA:   3'- -CAGGUGCG---------------AGGgUCU-------GugUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 199104 0.71 0.637071
Target:  5'- cUCUGCGCUCCCggcgaugucgacGGACACGAGuGCGa- -3'
miRNA:   3'- cAGGUGCGAGGG------------UCUGUGUUC-CGCcg -5'
16202 5' -57.9 NC_004065.1 + 198674 0.7 0.685193
Target:  5'- cGUCC-CGCggauuUUCCGGACGggguguuUAAGGCGGCc -3'
miRNA:   3'- -CAGGuGCG-----AGGGUCUGU-------GUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 198016 0.72 0.617355
Target:  5'- --gCAUGCUCuCCAGACGCuccuuGCGGCg -3'
miRNA:   3'- cagGUGCGAG-GGUCUGUGuuc--CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 197836 0.66 0.902356
Target:  5'- cGUCCAgG-UCCCAG-----GGGCGGCa -3'
miRNA:   3'- -CAGGUgCgAGGGUCuguguUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 197794 0.66 0.902356
Target:  5'- uGUCCGCGUuggUCaCCAG-CGCcc-GCGGCg -3'
miRNA:   3'- -CAGGUGCG---AG-GGUCuGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 196957 1.11 0.002018
Target:  5'- gGUCCACGCUCCCAGACACAAGGCGGCg -3'
miRNA:   3'- -CAGGUGCGAGGGUCUGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 196782 0.67 0.883129
Target:  5'- cGUCCugGCacaugaucagCCCc-ACgACGAGGCGGUg -3'
miRNA:   3'- -CAGGugCGa---------GGGucUG-UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 195649 0.66 0.902356
Target:  5'- -gCCuCGcCUCCCGGcagccgagcgGCGgAGGGUGGCg -3'
miRNA:   3'- caGGuGC-GAGGGUC----------UGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 195030 0.69 0.780218
Target:  5'- -gCCGCGCUCguCCAuGAC-CAGGGCgcacGGCg -3'
miRNA:   3'- caGGUGCGAG--GGU-CUGuGUUCCG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.