miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 194836 0.75 0.421415
Target:  5'- -gCCACGUUCuCCAGGC-CGAccacGGCGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUU----CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 194766 0.66 0.908336
Target:  5'- cGUCuCGCGCcgUCCCgAGACcgggucgcGCAGGGCGa- -3'
miRNA:   3'- -CAG-GUGCG--AGGG-UCUG--------UGUUCCGCcg -5'
16202 5' -57.9 NC_004065.1 + 194353 0.68 0.83127
Target:  5'- cUCCugGCUCgCGagcgacGugGCGAucGGCGGCc -3'
miRNA:   3'- cAGGugCGAGgGU------CugUGUU--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 193142 0.68 0.83127
Target:  5'- uGUCCGCG-UCa-GGACGCcugcugcuGGGCGGCg -3'
miRNA:   3'- -CAGGUGCgAGggUCUGUGu-------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 192843 0.67 0.883129
Target:  5'- --gC-CGCUCUCGGugAC--GGCGGCg -3'
miRNA:   3'- cagGuGCGAGGGUCugUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 191538 0.69 0.762132
Target:  5'- gGUCCACGU--CCAG-CA-AGGGCGGCu -3'
miRNA:   3'- -CAGGUGCGagGGUCuGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 188724 0.78 0.293144
Target:  5'- uGUCCAgGCUUaauagCAGGCGCAcGGCGGCg -3'
miRNA:   3'- -CAGGUgCGAGg----GUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 187394 0.68 0.814849
Target:  5'- gGUCCAcCGuCUCUCGGACACGu-GCGaGCu -3'
miRNA:   3'- -CAGGU-GC-GAGGGUCUGUGUucCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 174607 0.69 0.780218
Target:  5'- -cCCGCGC-CCCGGACAgccCAucAGGcCGGUc -3'
miRNA:   3'- caGGUGCGaGGGUCUGU---GU--UCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 170343 0.67 0.868559
Target:  5'- uUCUACGacgaCUCGGACgacgaggACGAGGUGGCg -3'
miRNA:   3'- cAGGUGCga--GGGUCUG-------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 169105 0.68 0.839232
Target:  5'- -gCCACG-UCCugaCAGACGCGGGccGCGGCc -3'
miRNA:   3'- caGGUGCgAGG---GUCUGUGUUC--CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 166540 0.66 0.89616
Target:  5'- -aCCugGCUgCgCGacGGCGCcuGGCGGCu -3'
miRNA:   3'- caGGugCGAgG-GU--CUGUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 164739 0.69 0.752925
Target:  5'- cGUCgAUGCUUCUGGACGCc--GCGGCc -3'
miRNA:   3'- -CAGgUGCGAGGGUCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 164129 0.66 0.902356
Target:  5'- uUCCAgGCg-CCGcGGCAuCAgcAGGCGGCa -3'
miRNA:   3'- cAGGUgCGagGGU-CUGU-GU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 163237 0.66 0.889749
Target:  5'- cGUCCGCucauGUUUCgucGGCGCAGcGGCGGCg -3'
miRNA:   3'- -CAGGUG----CGAGGgu-CUGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 158489 0.73 0.56836
Target:  5'- --aCACGUccgUCCCGcGAUAUAAGGCGGUa -3'
miRNA:   3'- cagGUGCG---AGGGU-CUGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 158061 0.69 0.771233
Target:  5'- cUCCGgGCUgCCCGGcucCACc-GGCGGCg -3'
miRNA:   3'- cAGGUgCGA-GGGUCu--GUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 157913 0.68 0.818184
Target:  5'- cGUCCAcCGUccuccugUCCAGucuggcgaucaggccGCGCAGGGUGGCg -3'
miRNA:   3'- -CAGGU-GCGa------GGGUC---------------UGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 155221 0.67 0.883129
Target:  5'- cUCCACGCUCgUCAGcaucuuGCGCGAGcGCuGCc -3'
miRNA:   3'- cAGGUGCGAG-GGUC------UGUGUUC-CGcCG- -5'
16202 5' -57.9 NC_004065.1 + 155132 0.67 0.876302
Target:  5'- cUCCGCGC-CCgCGagUACGAGGuCGGCu -3'
miRNA:   3'- cAGGUGCGaGG-GUcuGUGUUCC-GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.