miRNA display CGI


Results 41 - 60 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 154129 0.71 0.676401
Target:  5'- uGUCCAcaugggacgauCGC-CCCGGGCGgu-GGCGGCg -3'
miRNA:   3'- -CAGGU-----------GCGaGGGUCUGUguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 151525 0.71 0.656773
Target:  5'- aUCCGCGC-CCUGGAC----GGCGGCa -3'
miRNA:   3'- cAGGUGCGaGGGUCUGuguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 151340 0.69 0.771233
Target:  5'- cGUUCAgauacuCGCUCUCGGGCGCc--GCGGCg -3'
miRNA:   3'- -CAGGU------GCGAGGGUCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 149682 0.66 0.907748
Target:  5'- gGUCCACgGUUCCCAGAacuCAguaugaaAGGCGuCg -3'
miRNA:   3'- -CAGGUG-CGAGGGUCUgu-GU-------UCCGCcG- -5'
16202 5' -57.9 NC_004065.1 + 148829 0.7 0.715189
Target:  5'- --aCAUGCccucgCUCGGcCACGAGGCGGCc -3'
miRNA:   3'- cagGUGCGa----GGGUCuGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 147895 0.7 0.724743
Target:  5'- cGUCCGCGC-CgCCGGAUACGucagccGGGCGcaGCu -3'
miRNA:   3'- -CAGGUGCGaG-GGUCUGUGU------UCCGC--CG- -5'
16202 5' -57.9 NC_004065.1 + 146780 0.67 0.876302
Target:  5'- -cCUACGCcaCCCAGACcgccguGCAGuaugcuccucccGGCGGCg -3'
miRNA:   3'- caGGUGCGa-GGGUCUG------UGUU------------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 145881 0.71 0.637071
Target:  5'- -cCUugGCUCCCGGAgAUggGagaaugugcGCGGCa -3'
miRNA:   3'- caGGugCGAGGGUCUgUGuuC---------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 138532 0.7 0.705571
Target:  5'- uGUUgGCGCUCgaaCGcGGCACGAgcGGCGGCg -3'
miRNA:   3'- -CAGgUGCGAGg--GU-CUGUGUU--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 136420 0.66 0.889749
Target:  5'- gGUCCugGgggCCCGGugAgcCGAGGuCGGUa -3'
miRNA:   3'- -CAGGugCga-GGGUCugU--GUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 132388 0.68 0.839232
Target:  5'- -aCCgGCGuCUCCguGcCGCAAgGGCGGCu -3'
miRNA:   3'- caGG-UGC-GAGGguCuGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 132320 0.69 0.743618
Target:  5'- cUCCugGacagCCCGGGCGgc-GGCGGCa -3'
miRNA:   3'- cAGGugCga--GGGUCUGUguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 132094 0.74 0.492379
Target:  5'- -gCCACGCcggUgCCGGACGCGcGGCGGUu -3'
miRNA:   3'- caGGUGCG---AgGGUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 131855 0.76 0.396431
Target:  5'- -aCCACGCUgagCCUAGGCgGCGGuGGCGGCg -3'
miRNA:   3'- caGGUGCGA---GGGUCUG-UGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 131380 0.66 0.910666
Target:  5'- -aCCGCGCguacguacgagcgaCCgAGcGCACcgAAGGCGGCg -3'
miRNA:   3'- caGGUGCGa-------------GGgUC-UGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 130677 0.67 0.876302
Target:  5'- -gCCaACGCUCgUCGGGCGagGAGGCGGa -3'
miRNA:   3'- caGG-UGCGAG-GGUCUGUg-UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 130511 0.66 0.910666
Target:  5'- -gCCGCGCgUCCUccucgugcgcgccagGGACccCAAcGGCGGCa -3'
miRNA:   3'- caGGUGCG-AGGG---------------UCUGu-GUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 130056 0.66 0.914097
Target:  5'- -cCCGCGg-CCCGaGCACGccGCGGCg -3'
miRNA:   3'- caGGUGCgaGGGUcUGUGUucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127639 0.71 0.637071
Target:  5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3'
miRNA:   3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127116 0.66 0.908336
Target:  5'- cGUCCAguuCUCCCccauCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUgc-GAGGGucu-GUGUU-CCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.