miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 30604 0.69 0.752925
Target:  5'- cGUCCGCGUUCCgAGGCAgCGAcGCGuGUc -3'
miRNA:   3'- -CAGGUGCGAGGgUCUGU-GUUcCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 151525 0.71 0.656773
Target:  5'- aUCCGCGC-CCUGGAC----GGCGGCa -3'
miRNA:   3'- cAGGUGCGaGGGUCUGuguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 154129 0.71 0.676401
Target:  5'- uGUCCAcaugggacgauCGC-CCCGGGCGgu-GGCGGCg -3'
miRNA:   3'- -CAGGU-----------GCGaGGGUCUGUguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 123514 0.7 0.695894
Target:  5'- cGUCUGCGggUCCGGGCugguguggucguACAGGGUGGCc -3'
miRNA:   3'- -CAGGUGCgaGGGUCUG------------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 70631 0.7 0.695894
Target:  5'- --gCGCaGCUCUCAgGACGCuAGGUGGCg -3'
miRNA:   3'- cagGUG-CGAGGGU-CUGUGuUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 62408 0.7 0.705571
Target:  5'- -gCCGCGgaUCCAG-CACcaGAGGUGGCg -3'
miRNA:   3'- caGGUGCgaGGGUCuGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 138532 0.7 0.705571
Target:  5'- uGUUgGCGCUCgaaCGcGGCACGAgcGGCGGCg -3'
miRNA:   3'- -CAGgUGCGAGg--GU-CUGUGUU--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 121476 0.7 0.715189
Target:  5'- gGUCgGCGCgUCCgCGGGCGUgAAGGUGGCg -3'
miRNA:   3'- -CAGgUGCG-AGG-GUCUGUG-UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88695 0.7 0.724743
Target:  5'- cGUCCGCGUcguacaugacguUCUCGcGGCGCGA-GCGGCg -3'
miRNA:   3'- -CAGGUGCG------------AGGGU-CUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 127639 0.71 0.637071
Target:  5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3'
miRNA:   3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 145881 0.71 0.637071
Target:  5'- -cCUugGCUCCCGGAgAUggGagaaugugcGCGGCa -3'
miRNA:   3'- caGGugCGAGGGUCUgUGuuC---------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 50905 0.71 0.637071
Target:  5'- cUCCAcCGC-CaCCAGGCACGGGGUucacgGGCa -3'
miRNA:   3'- cAGGU-GCGaG-GGUCUGUGUUCCG-----CCG- -5'
16202 5' -57.9 NC_004065.1 + 188724 0.78 0.293144
Target:  5'- uGUCCAgGCUUaauagCAGGCGCAcGGCGGCg -3'
miRNA:   3'- -CAGGUgCGAGg----GUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 194836 0.75 0.421415
Target:  5'- -gCCACGUUCuCCAGGC-CGAccacGGCGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUU----CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 132094 0.74 0.492379
Target:  5'- -gCCACGCcggUgCCGGACGCGcGGCGGUu -3'
miRNA:   3'- caGGUGCG---AgGGUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 45526 0.74 0.510983
Target:  5'- gGUCUACGCcaCCCGGcgcCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUGCGa-GGGUCu--GUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 96238 0.73 0.572251
Target:  5'- cUCCGCGuCUCCCGGcucguggucgaggauGCggauggacgGCGGGGCGGCc -3'
miRNA:   3'- cAGGUGC-GAGGGUC---------------UG---------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 83165 0.72 0.576149
Target:  5'- cGUUCACGCgccgaugcagaCCAGGCGCucccGGCGGCc -3'
miRNA:   3'- -CAGGUGCGag---------GGUCUGUGuu--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120874 0.72 0.617355
Target:  5'- -aCCG-GCUugCCCGGGguCAGGGCGGCg -3'
miRNA:   3'- caGGUgCGA--GGGUCUguGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 198016 0.72 0.617355
Target:  5'- --gCAUGCUCuCCAGACGCuccuuGCGGCg -3'
miRNA:   3'- cagGUGCGAG-GGUCUGUGuuc--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.