Results 21 - 40 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16202 | 5' | -57.9 | NC_004065.1 | + | 30604 | 0.69 | 0.752925 |
Target: 5'- cGUCCGCGUUCCgAGGCAgCGAcGCGuGUc -3' miRNA: 3'- -CAGGUGCGAGGgUCUGU-GUUcCGC-CG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 88695 | 0.7 | 0.724743 |
Target: 5'- cGUCCGCGUcguacaugacguUCUCGcGGCGCGA-GCGGCg -3' miRNA: 3'- -CAGGUGCG------------AGGGU-CUGUGUUcCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 198016 | 0.72 | 0.617355 |
Target: 5'- --gCAUGCUCuCCAGACGCuccuuGCGGCg -3' miRNA: 3'- cagGUGCGAG-GGUCUGUGuuc--CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 120874 | 0.72 | 0.617355 |
Target: 5'- -aCCG-GCUugCCCGGGguCAGGGCGGCg -3' miRNA: 3'- caGGUgCGA--GGGUCUguGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 83165 | 0.72 | 0.576149 |
Target: 5'- cGUUCACGCgccgaugcagaCCAGGCGCucccGGCGGCc -3' miRNA: 3'- -CAGGUGCGag---------GGUCUGUGuu--CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 96238 | 0.73 | 0.572251 |
Target: 5'- cUCCGCGuCUCCCGGcucguggucgaggauGCggauggacgGCGGGGCGGCc -3' miRNA: 3'- cAGGUGC-GAGGGUC---------------UG---------UGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 45526 | 0.74 | 0.510983 |
Target: 5'- gGUCUACGCcaCCCGGcgcCGCGGcGGCGGCg -3' miRNA: 3'- -CAGGUGCGa-GGGUCu--GUGUU-CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 132094 | 0.74 | 0.492379 |
Target: 5'- -gCCACGCcggUgCCGGACGCGcGGCGGUu -3' miRNA: 3'- caGGUGCG---AgGGUCUGUGUuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 194836 | 0.75 | 0.421415 |
Target: 5'- -gCCACGUUCuCCAGGC-CGAccacGGCGGCg -3' miRNA: 3'- caGGUGCGAG-GGUCUGuGUU----CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 188724 | 0.78 | 0.293144 |
Target: 5'- uGUCCAgGCUUaauagCAGGCGCAcGGCGGCg -3' miRNA: 3'- -CAGGUgCGAGg----GUCUGUGUuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 50905 | 0.71 | 0.637071 |
Target: 5'- cUCCAcCGC-CaCCAGGCACGGGGUucacgGGCa -3' miRNA: 3'- cAGGU-GCGaG-GGUCUGUGUUCCG-----CCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 145881 | 0.71 | 0.637071 |
Target: 5'- -cCUugGCUCCCGGAgAUggGagaaugugcGCGGCa -3' miRNA: 3'- caGGugCGAGGGUCUgUGuuC---------CGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 121476 | 0.7 | 0.715189 |
Target: 5'- gGUCgGCGCgUCCgCGGGCGUgAAGGUGGCg -3' miRNA: 3'- -CAGgUGCG-AGG-GUCUGUG-UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 138532 | 0.7 | 0.705571 |
Target: 5'- uGUUgGCGCUCgaaCGcGGCACGAgcGGCGGCg -3' miRNA: 3'- -CAGgUGCGAGg--GU-CUGUGUU--CCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 62408 | 0.7 | 0.705571 |
Target: 5'- -gCCGCGgaUCCAG-CACcaGAGGUGGCg -3' miRNA: 3'- caGGUGCgaGGGUCuGUG--UUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 70631 | 0.7 | 0.695894 |
Target: 5'- --gCGCaGCUCUCAgGACGCuAGGUGGCg -3' miRNA: 3'- cagGUG-CGAGGGU-CUGUGuUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 123514 | 0.7 | 0.695894 |
Target: 5'- cGUCUGCGggUCCGGGCugguguggucguACAGGGUGGCc -3' miRNA: 3'- -CAGGUGCgaGGGUCUG------------UGUUCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 154129 | 0.71 | 0.676401 |
Target: 5'- uGUCCAcaugggacgauCGC-CCCGGGCGgu-GGCGGCg -3' miRNA: 3'- -CAGGU-----------GCGaGGGUCUGUguuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 151525 | 0.71 | 0.656773 |
Target: 5'- aUCCGCGC-CCUGGAC----GGCGGCa -3' miRNA: 3'- cAGGUGCGaGGGUCUGuguuCCGCCG- -5' |
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16202 | 5' | -57.9 | NC_004065.1 | + | 127639 | 0.71 | 0.637071 |
Target: 5'- -cUCGCGCUgCCGcugcGGCGCcgAGGGCGGCg -3' miRNA: 3'- caGGUGCGAgGGU----CUGUG--UUCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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