miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 96238 0.73 0.572251
Target:  5'- cUCCGCGuCUCCCGGcucguggucgaggauGCggauggacgGCGGGGCGGCc -3'
miRNA:   3'- cAGGUGC-GAGGGUC---------------UG---------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 45526 0.74 0.510983
Target:  5'- gGUCUACGCcaCCCGGcgcCGCGGcGGCGGCg -3'
miRNA:   3'- -CAGGUGCGa-GGGUCu--GUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 132094 0.74 0.492379
Target:  5'- -gCCACGCcggUgCCGGACGCGcGGCGGUu -3'
miRNA:   3'- caGGUGCG---AgGGUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 194836 0.75 0.421415
Target:  5'- -gCCACGUUCuCCAGGC-CGAccacGGCGGCg -3'
miRNA:   3'- caGGUGCGAG-GGUCUGuGUU----CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 188724 0.78 0.293144
Target:  5'- uGUCCAgGCUUaauagCAGGCGCAcGGCGGCg -3'
miRNA:   3'- -CAGGUgCGAGg----GUCUGUGUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 123514 0.7 0.695894
Target:  5'- cGUCUGCGggUCCGGGCugguguggucguACAGGGUGGCc -3'
miRNA:   3'- -CAGGUGCgaGGGUCUG------------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 70631 0.7 0.695894
Target:  5'- --gCGCaGCUCUCAgGACGCuAGGUGGCg -3'
miRNA:   3'- cagGUG-CGAGGGU-CUGUGuUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 42722 0.68 0.806403
Target:  5'- cUCCucCGC-CCCAGugauCGCAGcgcGGCGGCc -3'
miRNA:   3'- cAGGu-GCGaGGGUCu---GUGUU---CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 85156 0.69 0.78908
Target:  5'- aUCCA-GCUCCCAGACG--GGGaaGGCc -3'
miRNA:   3'- cAGGUgCGAGGGUCUGUguUCCg-CCG- -5'
16202 5' -57.9 NC_004065.1 + 195030 0.69 0.780218
Target:  5'- -gCCGCGCUCguCCAuGAC-CAGGGCgcacGGCg -3'
miRNA:   3'- caGGUGCGAG--GGU-CUGuGUUCCG----CCG- -5'
16202 5' -57.9 NC_004065.1 + 99540 0.69 0.780218
Target:  5'- gGUCgGCGCUCCCGucuCGCc--GCGGCg -3'
miRNA:   3'- -CAGgUGCGAGGGUcu-GUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 80130 0.69 0.780218
Target:  5'- gGUgCAgGUcgUCCCuGGCGCGgcagAGGCGGCu -3'
miRNA:   3'- -CAgGUgCG--AGGGuCUGUGU----UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 109767 0.69 0.771233
Target:  5'- uUCUACGCg-CCGGucaGCAGGGCaGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCug-UGUUCCG-CCG- -5'
16202 5' -57.9 NC_004065.1 + 191538 0.69 0.762132
Target:  5'- gGUCCACGU--CCAG-CA-AGGGCGGCu -3'
miRNA:   3'- -CAGGUGCGagGGUCuGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 55584 0.69 0.752925
Target:  5'- gGUCC-CGCcgUCGGACACGAGGaugGGCg -3'
miRNA:   3'- -CAGGuGCGagGGUCUGUGUUCCg--CCG- -5'
16202 5' -57.9 NC_004065.1 + 30604 0.69 0.752925
Target:  5'- cGUCCGCGUUCCgAGGCAgCGAcGCGuGUc -3'
miRNA:   3'- -CAGGUGCGAGGgUCUGU-GUUcCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 88695 0.7 0.724743
Target:  5'- cGUCCGCGUcguacaugacguUCUCGcGGCGCGA-GCGGCg -3'
miRNA:   3'- -CAGGUGCG------------AGGGU-CUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 121476 0.7 0.715189
Target:  5'- gGUCgGCGCgUCCgCGGGCGUgAAGGUGGCg -3'
miRNA:   3'- -CAGgUGCG-AGG-GUCUGUG-UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 138532 0.7 0.705571
Target:  5'- uGUUgGCGCUCgaaCGcGGCACGAgcGGCGGCg -3'
miRNA:   3'- -CAGgUGCGAGg--GU-CUGUGUU--CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 62408 0.7 0.705571
Target:  5'- -gCCGCGgaUCCAG-CACcaGAGGUGGCg -3'
miRNA:   3'- caGGUGCgaGGGUCuGUG--UUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.