miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 44516 0.68 0.806403
Target:  5'- cGUCCggcgGCGCgauguuaCCGGGgACGGuGGCGGCg -3'
miRNA:   3'- -CAGG----UGCGag-----GGUCUgUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 42722 0.68 0.806403
Target:  5'- cUCCucCGC-CCCAGugauCGCAGcgcGGCGGCc -3'
miRNA:   3'- cAGGu-GCGaGGGUCu---GUGUU---CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 85156 0.69 0.78908
Target:  5'- aUCCA-GCUCCCAGACG--GGGaaGGCc -3'
miRNA:   3'- cAGGUgCGAGGGUCUGUguUCCg-CCG- -5'
16202 5' -57.9 NC_004065.1 + 195030 0.69 0.780218
Target:  5'- -gCCGCGCUCguCCAuGAC-CAGGGCgcacGGCg -3'
miRNA:   3'- caGGUGCGAG--GGU-CUGuGUUCCG----CCG- -5'
16202 5' -57.9 NC_004065.1 + 88695 0.7 0.724743
Target:  5'- cGUCCGCGUcguacaugacguUCUCGcGGCGCGA-GCGGCg -3'
miRNA:   3'- -CAGGUGCG------------AGGGU-CUGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 30604 0.69 0.752925
Target:  5'- cGUCCGCGUUCCgAGGCAgCGAcGCGuGUc -3'
miRNA:   3'- -CAGGUGCGAGGgUCUGU-GUUcCGC-CG- -5'
16202 5' -57.9 NC_004065.1 + 55584 0.69 0.752925
Target:  5'- gGUCC-CGCcgUCGGACACGAGGaugGGCg -3'
miRNA:   3'- -CAGGuGCGagGGUCUGUGUUCCg--CCG- -5'
16202 5' -57.9 NC_004065.1 + 191538 0.69 0.762132
Target:  5'- gGUCCACGU--CCAG-CA-AGGGCGGCu -3'
miRNA:   3'- -CAGGUGCGagGGUCuGUgUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 109767 0.69 0.771233
Target:  5'- uUCUACGCg-CCGGucaGCAGGGCaGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCug-UGUUCCG-CCG- -5'
16202 5' -57.9 NC_004065.1 + 80130 0.69 0.780218
Target:  5'- gGUgCAgGUcgUCCCuGGCGCGgcagAGGCGGCu -3'
miRNA:   3'- -CAgGUgCG--AGGGuCUGUGU----UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 99540 0.69 0.780218
Target:  5'- gGUCgGCGCUCCCGucuCGCc--GCGGCg -3'
miRNA:   3'- -CAGgUGCGAGGGUcu-GUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 115783 0.72 0.607509
Target:  5'- gGUUgGCGgUCCCGGGCACGGaaacuGCGGCc -3'
miRNA:   3'- -CAGgUGCgAGGGUCUGUGUUc----CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3140 0.72 0.597681
Target:  5'- uUCCGCGgUCCCGGGC-CAAGuuucuaccucaaGUGGCa -3'
miRNA:   3'- cAGGUGCgAGGGUCUGuGUUC------------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 79569 0.72 0.587875
Target:  5'- -gCgGCGCUUCCuGGC-CGAGGUGGCc -3'
miRNA:   3'- caGgUGCGAGGGuCUGuGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 158489 0.73 0.56836
Target:  5'- --aCACGUccgUCCCGcGAUAUAAGGCGGUa -3'
miRNA:   3'- cagGUGCG---AGGGU-CUGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29567 0.73 0.520394
Target:  5'- -gCCGCGCUCCCGcuauCugAcGGCGGCc -3'
miRNA:   3'- caGGUGCGAGGGUcu--GugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29080 0.74 0.483195
Target:  5'- -gCCGCGCUCCCu-GCGCuccGAGGCGGa -3'
miRNA:   3'- caGGUGCGAGGGucUGUG---UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 5786 0.74 0.483195
Target:  5'- cUCC-CGCUCgCCGGGCGCAggaggaaaaaaAGGCGGa -3'
miRNA:   3'- cAGGuGCGAG-GGUCUGUGU-----------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 88525 0.75 0.418874
Target:  5'- uGUCCGCGCUCguccaggacccugaCCAGGCAgAAaGCGGCc -3'
miRNA:   3'- -CAGGUGCGAG--------------GGUCUGUgUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 116713 0.66 0.914097
Target:  5'- aUCC-CGCgUCCGGcGCGCGA-GCGGCg -3'
miRNA:   3'- cAGGuGCGaGGGUC-UGUGUUcCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.