miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 131855 0.76 0.396431
Target:  5'- -aCCACGCUgagCCUAGGCgGCGGuGGCGGCg -3'
miRNA:   3'- caGGUGCGA---GGGUCUG-UGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 147895 0.7 0.724743
Target:  5'- cGUCCGCGC-CgCCGGAUACGucagccGGGCGcaGCu -3'
miRNA:   3'- -CAGGUGCGaG-GGUCUGUGU------UCCGC--CG- -5'
16202 5' -57.9 NC_004065.1 + 164739 0.69 0.752925
Target:  5'- cGUCgAUGCUUCUGGACGCc--GCGGCc -3'
miRNA:   3'- -CAGgUGCGAGGGUCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 116713 0.66 0.914097
Target:  5'- aUCC-CGCgUCCGGcGCGCGA-GCGGCg -3'
miRNA:   3'- cAGGuGCGaGGGUC-UGUGUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29567 0.73 0.520394
Target:  5'- -gCCGCGCUCCCGcuauCugAcGGCGGCc -3'
miRNA:   3'- caGGUGCGAGGGUcu--GugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 158489 0.73 0.56836
Target:  5'- --aCACGUccgUCCCGcGAUAUAAGGCGGUa -3'
miRNA:   3'- cagGUGCG---AGGGU-CUGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3140 0.72 0.597681
Target:  5'- uUCCGCGgUCCCGGGC-CAAGuuucuaccucaaGUGGCa -3'
miRNA:   3'- cAGGUGCgAGGGUCUGuGUUC------------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 115783 0.72 0.607509
Target:  5'- gGUUgGCGgUCCCGGGCACGGaaacuGCGGCc -3'
miRNA:   3'- -CAGgUGCgAGGGUCUGUGUUc----CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120093 0.71 0.656773
Target:  5'- -cUCAUGacCUCCCgGGACGCGAcGGCGGCc -3'
miRNA:   3'- caGGUGC--GAGGG-UCUGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3641 0.7 0.715189
Target:  5'- cUCCGCGCUCuCCgAGugGCucGAGGCGa- -3'
miRNA:   3'- cAGGUGCGAG-GG-UCugUG--UUCCGCcg -5'
16202 5' -57.9 NC_004065.1 + 68520 0.7 0.695894
Target:  5'- ---gACGCaucUCCCGGAgGCcgagGAGGCGGCg -3'
miRNA:   3'- caggUGCG---AGGGUCUgUG----UUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 101592 0.71 0.646927
Target:  5'- cUCCGcCGCgCUCAGACuCGGuGGCGGCg -3'
miRNA:   3'- cAGGU-GCGaGGGUCUGuGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88525 0.75 0.418874
Target:  5'- uGUCCGCGCUCguccaggacccugaCCAGGCAgAAaGCGGCc -3'
miRNA:   3'- -CAGGUGCGAG--------------GGUCUGUgUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88364 0.7 0.705571
Target:  5'- uGUCguCGCUgCCCA---GCAAGGUGGCg -3'
miRNA:   3'- -CAGguGCGA-GGGUcugUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 5786 0.74 0.483195
Target:  5'- cUCC-CGCUCgCCGGGCGCAggaggaaaaaaAGGCGGa -3'
miRNA:   3'- cAGGuGCGAG-GGUCUGUGU-----------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 199104 0.71 0.637071
Target:  5'- cUCUGCGCUCCCggcgaugucgacGGACACGAGuGCGa- -3'
miRNA:   3'- cAGGUGCGAGGG------------UCUGUGUUC-CGCcg -5'
16202 5' -57.9 NC_004065.1 + 148829 0.7 0.715189
Target:  5'- --aCAUGCccucgCUCGGcCACGAGGCGGCc -3'
miRNA:   3'- cagGUGCGa----GGGUCuGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 132320 0.69 0.743618
Target:  5'- cUCCugGacagCCCGGGCGgc-GGCGGCa -3'
miRNA:   3'- cAGGugCga--GGGUCUGUguuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29080 0.74 0.483195
Target:  5'- -gCCGCGCUCCCu-GCGCuccGAGGCGGa -3'
miRNA:   3'- caGGUGCGAGGGucUGUG---UUCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 79569 0.72 0.587875
Target:  5'- -gCgGCGCUUCCuGGC-CGAGGUGGCc -3'
miRNA:   3'- caGgUGCGAGGGuCUGuGUUCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.