miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16202 5' -57.9 NC_004065.1 + 157913 0.68 0.818184
Target:  5'- cGUCCAcCGUccuccugUCCAGucuggcgaucaggccGCGCAGGGUGGCg -3'
miRNA:   3'- -CAGGU-GCGa------GGGUC---------------UGUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 147895 0.7 0.724743
Target:  5'- cGUCCGCGC-CgCCGGAUACGucagccGGGCGcaGCu -3'
miRNA:   3'- -CAGGUGCGaG-GGUCUGUGU------UCCGC--CG- -5'
16202 5' -57.9 NC_004065.1 + 5786 0.74 0.483195
Target:  5'- cUCC-CGCUCgCCGGGCGCAggaggaaaaaaAGGCGGa -3'
miRNA:   3'- cAGGuGCGAG-GGUCUGUGU-----------UCCGCCg -5'
16202 5' -57.9 NC_004065.1 + 7148 0.68 0.814849
Target:  5'- aUCCACGUcgCCGGuuuCACGGGGaUGGCg -3'
miRNA:   3'- cAGGUGCGagGGUCu--GUGUUCC-GCCG- -5'
16202 5' -57.9 NC_004065.1 + 88525 0.75 0.418874
Target:  5'- uGUCCGCGCUCguccaggacccugaCCAGGCAgAAaGCGGCc -3'
miRNA:   3'- -CAGGUGCGAG--------------GGUCUGUgUUcCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 223937 0.66 0.89616
Target:  5'- cGUCCGCaUUCUCuGACGCcacGCGGCg -3'
miRNA:   3'- -CAGGUGcGAGGGuCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 29567 0.73 0.520394
Target:  5'- -gCCGCGCUCCCGcuauCugAcGGCGGCc -3'
miRNA:   3'- caGGUGCGAGGGUcu--GugUuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 163237 0.66 0.889749
Target:  5'- cGUCCGCucauGUUUCgucGGCGCAGcGGCGGCg -3'
miRNA:   3'- -CAGGUG----CGAGGgu-CUGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 40140 0.67 0.883129
Target:  5'- cUCCGCGCUCgUgAGACGCugccgacGGCaGCa -3'
miRNA:   3'- cAGGUGCGAG-GgUCUGUGuu-----CCGcCG- -5'
16202 5' -57.9 NC_004065.1 + 30055 0.67 0.883129
Target:  5'- cUCgGCGCucgaUCCCAGAgACGGGaccgccGUGGCg -3'
miRNA:   3'- cAGgUGCG----AGGGUCUgUGUUC------CGCCG- -5'
16202 5' -57.9 NC_004065.1 + 146780 0.67 0.876302
Target:  5'- -cCUACGCcaCCCAGACcgccguGCAGuaugcuccucccGGCGGCg -3'
miRNA:   3'- caGGUGCGa-GGGUCUG------UGUU------------CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 170343 0.67 0.868559
Target:  5'- uUCUACGacgaCUCGGACgacgaggACGAGGUGGCg -3'
miRNA:   3'- cAGGUGCga--GGGUCUG-------UGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 193142 0.68 0.83127
Target:  5'- uGUCCGCG-UCa-GGACGCcugcugcuGGGCGGCg -3'
miRNA:   3'- -CAGGUGCgAGggUCUGUGu-------UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 35978 0.68 0.814849
Target:  5'- cGUCCGCGC-CauGGACAUguucGAcGGCGGCa -3'
miRNA:   3'- -CAGGUGCGaGggUCUGUG----UU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 103678 0.69 0.78908
Target:  5'- aUCCugGacaaCCCGGAgaccuaCACGguGGGCGGCg -3'
miRNA:   3'- cAGGugCga--GGGUCU------GUGU--UCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 158061 0.69 0.771233
Target:  5'- cUCCGgGCUgCCCGGcucCACc-GGCGGCg -3'
miRNA:   3'- cAGGUgCGA-GGGUCu--GUGuuCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 164739 0.69 0.752925
Target:  5'- cGUCgAUGCUUCUGGACGCc--GCGGCc -3'
miRNA:   3'- -CAGgUGCGAGGGUCUGUGuucCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 88364 0.7 0.705571
Target:  5'- uGUCguCGCUgCCCA---GCAAGGUGGCg -3'
miRNA:   3'- -CAGguGCGA-GGGUcugUGUUCCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 120093 0.71 0.656773
Target:  5'- -cUCAUGacCUCCCgGGACGCGAcGGCGGCc -3'
miRNA:   3'- caGGUGC--GAGGG-UCUGUGUU-CCGCCG- -5'
16202 5' -57.9 NC_004065.1 + 3140 0.72 0.597681
Target:  5'- uUCCGCGgUCCCGGGC-CAAGuuucuaccucaaGUGGCa -3'
miRNA:   3'- cAGGUGCgAGGGUCUGuGUUC------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.