miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 179541 0.66 0.996224
Target:  5'- uGUGGGGaccUGCGGugauGACGaCGAGCAUCg -3'
miRNA:   3'- cCAUCUUca-GCGCC----UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 116578 0.66 0.996224
Target:  5'- aGGgGGAAuGUCGCaGGGcgaACGUGAucGCGUCu -3'
miRNA:   3'- -CCaUCUU-CAGCG-CCU---UGCGCU--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 196814 0.66 0.996224
Target:  5'- cGGUGgGggGUCGUGGucaccugcggcaGGUGCGGGCGa- -3'
miRNA:   3'- -CCAU-CuuCAGCGCC------------UUGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 21676 0.66 0.996224
Target:  5'- -aUAGAcGGUCGCGGucagauACGCGAccGCgAUCc -3'
miRNA:   3'- ccAUCU-UCAGCGCCu-----UGCGCU--CG-UAG- -5'
16203 5' -52.3 NC_004065.1 + 164640 0.66 0.996166
Target:  5'- cGGaGGAacagucgGGUCGCGGcGCGCGucGCcagGUCg -3'
miRNA:   3'- -CCaUCU-------UCAGCGCCuUGCGCu-CG---UAG- -5'
16203 5' -52.3 NC_004065.1 + 110833 0.66 0.995604
Target:  5'- --cAGGcaccAGU-GCGGGGCGCGGGCcgCc -3'
miRNA:   3'- ccaUCU----UCAgCGCCUUGCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 172090 0.66 0.995604
Target:  5'- gGGUGGAGGggcCGgGGGAgGCG-GC-UCu -3'
miRNA:   3'- -CCAUCUUCa--GCgCCUUgCGCuCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 135952 0.66 0.995604
Target:  5'- aGGcgAGAGGcagagcaaaaGCGGAGCGuCGAGCGg- -3'
miRNA:   3'- -CCa-UCUUCag--------CGCCUUGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 18025 0.66 0.995604
Target:  5'- cGUAGAGGUCugguucguCGGGcuGCGCGAG-GUCg -3'
miRNA:   3'- cCAUCUUCAGc-------GCCU--UGCGCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 38396 0.66 0.994903
Target:  5'- gGGUGGAAuacGUCGgGGAcacggacuucGCGggagaGGGCGUCu -3'
miRNA:   3'- -CCAUCUU---CAGCgCCU----------UGCg----CUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 78587 0.66 0.994903
Target:  5'- gGGUcGAcGUCGCcgucGAACGCGA-CGUCg -3'
miRNA:   3'- -CCAuCUuCAGCGc---CUUGCGCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 63071 0.66 0.994903
Target:  5'- --cAGGAGUCGcCGGucgccggcgAGCGaCGGGCGUUg -3'
miRNA:   3'- ccaUCUUCAGC-GCC---------UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 102977 0.66 0.994903
Target:  5'- cGGUAGuAGUCGCGGcgcccgcccuuGACGagcuuuaggucCGAGCGc- -3'
miRNA:   3'- -CCAUCuUCAGCGCC-----------UUGC-----------GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 62237 0.66 0.994115
Target:  5'- gGGaUAGGAGUCGaCGGAGuCGCcuGAGUg-- -3'
miRNA:   3'- -CC-AUCUUCAGC-GCCUU-GCG--CUCGuag -5'
16203 5' -52.3 NC_004065.1 + 101033 0.66 0.99323
Target:  5'- ---cGAuuccUCGCGGAACGCGuugaucuuGGCGUCc -3'
miRNA:   3'- ccauCUuc--AGCGCCUUGCGC--------UCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 41121 0.66 0.99323
Target:  5'- aGGUGuccGGGUCGuCGGGcCGUGAGCuUCu -3'
miRNA:   3'- -CCAUc--UUCAGC-GCCUuGCGCUCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 127480 0.66 0.99323
Target:  5'- aGGUGGucGggCGCGG--CGgGAGCGUUg -3'
miRNA:   3'- -CCAUCuuCa-GCGCCuuGCgCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 62109 0.67 0.992243
Target:  5'- cGGUcGuuacgcUCGCGGGAgGCG-GCAUCg -3'
miRNA:   3'- -CCAuCuuc---AGCGCCUUgCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 55766 0.67 0.992243
Target:  5'- aGUGGAAGaUgGCGGucucGGCGCcGAGCAg- -3'
miRNA:   3'- cCAUCUUC-AgCGCC----UUGCG-CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 184819 0.67 0.992243
Target:  5'- cGGUGGcGGUgGCGGcAGCGgCG-GCGUg -3'
miRNA:   3'- -CCAUCuUCAgCGCC-UUGC-GCuCGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.