Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16203 | 5' | -52.3 | NC_004065.1 | + | 21676 | 0.66 | 0.996224 |
Target: 5'- -aUAGAcGGUCGCGGucagauACGCGAccGCgAUCc -3' miRNA: 3'- ccAUCU-UCAGCGCCu-----UGCGCU--CG-UAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 116578 | 0.66 | 0.996224 |
Target: 5'- aGGgGGAAuGUCGCaGGGcgaACGUGAucGCGUCu -3' miRNA: 3'- -CCaUCUU-CAGCG-CCU---UGCGCU--CGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 196814 | 0.66 | 0.996224 |
Target: 5'- cGGUGgGggGUCGUGGucaccugcggcaGGUGCGGGCGa- -3' miRNA: 3'- -CCAU-CuuCAGCGCC------------UUGCGCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 63071 | 0.66 | 0.994903 |
Target: 5'- --cAGGAGUCGcCGGucgccggcgAGCGaCGGGCGUUg -3' miRNA: 3'- ccaUCUUCAGC-GCC---------UUGC-GCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 102977 | 0.66 | 0.994903 |
Target: 5'- cGGUAGuAGUCGCGGcgcccgcccuuGACGagcuuuaggucCGAGCGc- -3' miRNA: 3'- -CCAUCuUCAGCGCC-----------UUGC-----------GCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 18025 | 0.66 | 0.995604 |
Target: 5'- cGUAGAGGUCugguucguCGGGcuGCGCGAG-GUCg -3' miRNA: 3'- cCAUCUUCAGc-------GCCU--UGCGCUCgUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 110833 | 0.66 | 0.995604 |
Target: 5'- --cAGGcaccAGU-GCGGGGCGCGGGCcgCc -3' miRNA: 3'- ccaUCU----UCAgCGCCUUGCGCUCGuaG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 179541 | 0.66 | 0.996224 |
Target: 5'- uGUGGGGaccUGCGGugauGACGaCGAGCAUCg -3' miRNA: 3'- cCAUCUUca-GCGCC----UUGC-GCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 78587 | 0.66 | 0.994903 |
Target: 5'- gGGUcGAcGUCGCcgucGAACGCGA-CGUCg -3' miRNA: 3'- -CCAuCUuCAGCGc---CUUGCGCUcGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 164640 | 0.66 | 0.996166 |
Target: 5'- cGGaGGAacagucgGGUCGCGGcGCGCGucGCcagGUCg -3' miRNA: 3'- -CCaUCU-------UCAGCGCCuUGCGCu-CG---UAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 62237 | 0.66 | 0.994115 |
Target: 5'- gGGaUAGGAGUCGaCGGAGuCGCcuGAGUg-- -3' miRNA: 3'- -CC-AUCUUCAGC-GCCUU-GCG--CUCGuag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 101033 | 0.66 | 0.99323 |
Target: 5'- ---cGAuuccUCGCGGAACGCGuugaucuuGGCGUCc -3' miRNA: 3'- ccauCUuc--AGCGCCUUGCGC--------UCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 172090 | 0.66 | 0.995604 |
Target: 5'- gGGUGGAGGggcCGgGGGAgGCG-GC-UCu -3' miRNA: 3'- -CCAUCUUCa--GCgCCUUgCGCuCGuAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 135952 | 0.66 | 0.995604 |
Target: 5'- aGGcgAGAGGcagagcaaaaGCGGAGCGuCGAGCGg- -3' miRNA: 3'- -CCa-UCUUCag--------CGCCUUGC-GCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 38396 | 0.66 | 0.994903 |
Target: 5'- gGGUGGAAuacGUCGgGGAcacggacuucGCGggagaGGGCGUCu -3' miRNA: 3'- -CCAUCUU---CAGCgCCU----------UGCg----CUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 41121 | 0.66 | 0.99323 |
Target: 5'- aGGUGuccGGGUCGuCGGGcCGUGAGCuUCu -3' miRNA: 3'- -CCAUc--UUCAGC-GCCUuGCGCUCGuAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 127480 | 0.66 | 0.99323 |
Target: 5'- aGGUGGucGggCGCGG--CGgGAGCGUUg -3' miRNA: 3'- -CCAUCuuCa-GCGCCuuGCgCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 226124 | 0.67 | 0.992243 |
Target: 5'- aGGcGGggGUCGCcgcguGGAgGCuGGCAUCg -3' miRNA: 3'- -CCaUCuuCAGCGc----CUUgCGcUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 62109 | 0.67 | 0.992243 |
Target: 5'- cGGUcGuuacgcUCGCGGGAgGCG-GCAUCg -3' miRNA: 3'- -CCAuCuuc---AGCGCCUUgCGCuCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 55766 | 0.67 | 0.992243 |
Target: 5'- aGUGGAAGaUgGCGGucucGGCGCcGAGCAg- -3' miRNA: 3'- cCAUCUUC-AgCGCC----UUGCG-CUCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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