miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 197207 1.13 0.005556
Target:  5'- cGGUAGAAGUCGCGGAACGCGAGCAUCa -3'
miRNA:   3'- -CCAUCUUCAGCGCCUUGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 78880 0.77 0.674744
Target:  5'- --cAGguGUCGCGGAGCGCGuGCAc- -3'
miRNA:   3'- ccaUCuuCAGCGCCUUGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 70397 0.76 0.694856
Target:  5'- --gAGcAAGUaCGCGGAgcugaACGCGAGCAUCc -3'
miRNA:   3'- ccaUC-UUCA-GCGCCU-----UGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 164928 0.76 0.704838
Target:  5'- uGGUcacacAGAAGUCGuuGAACGCGuGUAUCu -3'
miRNA:   3'- -CCA-----UCUUCAGCgcCUUGCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 200848 0.74 0.82583
Target:  5'- cGGUGGAGuucggcGUCGacgGGGGCGCGGGCGg- -3'
miRNA:   3'- -CCAUCUU------CAGCg--CCUUGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 51636 0.72 0.893676
Target:  5'- gGGcAGAAGUCGCGucggauccaggaGAGCGCGGGUuccuugaugGUCa -3'
miRNA:   3'- -CCaUCUUCAGCGC------------CUUGCGCUCG---------UAG- -5'
16203 5' -52.3 NC_004065.1 + 145728 0.71 0.917613
Target:  5'- cGGUGGAGGagGCGGGagcggugaugaguGCGcCGAucGCGUCg -3'
miRNA:   3'- -CCAUCUUCagCGCCU-------------UGC-GCU--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 6424 0.71 0.917613
Target:  5'- uGGUGGAuagauacagguuuAGUCG-GGAGCGUGcAGCGUg -3'
miRNA:   3'- -CCAUCU-------------UCAGCgCCUUGCGC-UCGUAg -5'
16203 5' -52.3 NC_004065.1 + 195445 0.71 0.91818
Target:  5'- ---cGgcGUCGCGGAGCGCacggucuGCGUCg -3'
miRNA:   3'- ccauCuuCAGCGCCUUGCGcu-----CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 199466 0.71 0.92903
Target:  5'- ---cGAAGUCGCGGAcgAUGCG-GCAg- -3'
miRNA:   3'- ccauCUUCAGCGCCU--UGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 194080 0.71 0.934101
Target:  5'- -aUAGAAGUCGCGGu-CG-GAGCAc- -3'
miRNA:   3'- ccAUCUUCAGCGCCuuGCgCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 215359 0.71 0.934101
Target:  5'- uGGUGG-AGUCGaCGGAACGUGuGUcugugacgauGUCg -3'
miRNA:   3'- -CCAUCuUCAGC-GCCUUGCGCuCG----------UAG- -5'
16203 5' -52.3 NC_004065.1 + 90728 0.7 0.938936
Target:  5'- cGUuGGAGUCGCaGAGCGCucgGAGCAg- -3'
miRNA:   3'- cCAuCUUCAGCGcCUUGCG---CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 138447 0.7 0.947907
Target:  5'- --gAGggGUCGgGGcGgGCGAGCAg- -3'
miRNA:   3'- ccaUCuuCAGCgCCuUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 24040 0.7 0.952046
Target:  5'- --cAGAGGUCGUcggugaGGAugGUGAGCGg- -3'
miRNA:   3'- ccaUCUUCAGCG------CCUugCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 194105 0.7 0.955959
Target:  5'- aGGgAGgcGUCGCaGAccCGCGGGUAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGcCUu-GCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 74650 0.69 0.959649
Target:  5'- gGGUcuGAGGUC-CGGAcCGCGGcGCGUCc -3'
miRNA:   3'- -CCAu-CUUCAGcGCCUuGCGCU-CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 211467 0.69 0.96312
Target:  5'- cGG-AGGAGUCGcCGGAGagguCGUcGGCGUCg -3'
miRNA:   3'- -CCaUCUUCAGC-GCCUU----GCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 229671 0.69 0.96312
Target:  5'- aGGUGGgcGUCGgGGcGCGCGuccGC-UCg -3'
miRNA:   3'- -CCAUCuuCAGCgCCuUGCGCu--CGuAG- -5'
16203 5' -52.3 NC_004065.1 + 127239 0.69 0.966378
Target:  5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3'
miRNA:   3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.