miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 127239 0.69 0.966378
Target:  5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3'
miRNA:   3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 91113 0.69 0.969427
Target:  5'- aGUAGAAGagcgccUCGCuGAGCGCGGG-GUCg -3'
miRNA:   3'- cCAUCUUC------AGCGcCUUGCGCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 208729 0.69 0.972273
Target:  5'- aGUAGAAc-CGCGGGAacgGCGAGCAg- -3'
miRNA:   3'- cCAUCUUcaGCGCCUUg--CGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 107447 0.69 0.972273
Target:  5'- --aGGAGGUCGUGGu---CGGGCGUCu -3'
miRNA:   3'- ccaUCUUCAGCGCCuugcGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 139834 0.69 0.974924
Target:  5'- cGGccuGGAGUCcCGGGAgGCGGGCGa- -3'
miRNA:   3'- -CCau-CUUCAGcGCCUUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 167325 0.69 0.974924
Target:  5'- uGGUGGuGGUgacgaccugcgUGCGGAACGCG-GCGc- -3'
miRNA:   3'- -CCAUCuUCA-----------GCGCCUUGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 99524 0.68 0.977384
Target:  5'- --gAGGAGgacgCGCGGcuCGaUGAGCAUCu -3'
miRNA:   3'- ccaUCUUCa---GCGCCuuGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 103703 0.68 0.977384
Target:  5'- cGGUGGgcGgCGgGGAGCGCcuggcGGGCGUg -3'
miRNA:   3'- -CCAUCuuCaGCgCCUUGCG-----CUCGUAg -5'
16203 5' -52.3 NC_004065.1 + 32938 0.68 0.977384
Target:  5'- cGGUcGGcuccCGCGcGGAUGCGGGCGUCg -3'
miRNA:   3'- -CCAuCUuca-GCGC-CUUGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 188613 0.68 0.977384
Target:  5'- --cGGucGUCGCGGAGaacuucCGCGAGUcgCu -3'
miRNA:   3'- ccaUCuuCAGCGCCUU------GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 191201 0.68 0.979662
Target:  5'- aGGcUGGggGUCGgGGAGaucaGCGAGaggCg -3'
miRNA:   3'- -CC-AUCuuCAGCgCCUUg---CGCUCguaG- -5'
16203 5' -52.3 NC_004065.1 + 15181 0.68 0.979662
Target:  5'- uGUGGGA--CGCGGAcaACGCGAGgCGUUu -3'
miRNA:   3'- cCAUCUUcaGCGCCU--UGCGCUC-GUAG- -5'
16203 5' -52.3 NC_004065.1 + 171982 0.68 0.981766
Target:  5'- cGG-AGggGUCGuCGuGAACGaCGAcCAUCa -3'
miRNA:   3'- -CCaUCuuCAGC-GC-CUUGC-GCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 211392 0.68 0.981766
Target:  5'- cGGcAGAGGUgGCGGAggcgggggaaACGUGGGCc-- -3'
miRNA:   3'- -CCaUCUUCAgCGCCU----------UGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 122102 0.68 0.981766
Target:  5'- cGGgGGAcacGUCGCagaccaGGAACGCGGGCugcUCg -3'
miRNA:   3'- -CCaUCUu--CAGCG------CCUUGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 121119 0.68 0.981766
Target:  5'- ------cGUCGCGGAggcGCGCGAGUuuuUCu -3'
miRNA:   3'- ccaucuuCAGCGCCU---UGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 17790 0.68 0.983701
Target:  5'- gGGUGGccGUCGCGuuuGGCGCGAucccGCGUg -3'
miRNA:   3'- -CCAUCuuCAGCGCc--UUGCGCU----CGUAg -5'
16203 5' -52.3 NC_004065.1 + 136270 0.68 0.983701
Target:  5'- uGGUcugGGGAGccaaGCGGggUGCGAGgaAUCg -3'
miRNA:   3'- -CCA---UCUUCag--CGCCuuGCGCUCg-UAG- -5'
16203 5' -52.3 NC_004065.1 + 205747 0.68 0.983701
Target:  5'- ------uGUCGCGGGGcCGCGAGCcgUg -3'
miRNA:   3'- ccaucuuCAGCGCCUU-GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 215378 0.68 0.985477
Target:  5'- aGUAaauuuuAGUCGCGcGAGaCGCGAGCuGUCg -3'
miRNA:   3'- cCAUcu----UCAGCGC-CUU-GCGCUCG-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.