miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 203840 0.68 0.985477
Target:  5'- ---cGAGGUCGaaaGGGACGCGccGGCAc- -3'
miRNA:   3'- ccauCUUCAGCg--CCUUGCGC--UCGUag -5'
16203 5' -52.3 NC_004065.1 + 146570 0.68 0.985477
Target:  5'- gGGcUAGggGUCGCGGGuaa-GGGgAUCg -3'
miRNA:   3'- -CC-AUCuuCAGCGCCUugcgCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 215378 0.68 0.985477
Target:  5'- aGUAaauuuuAGUCGCGcGAGaCGCGAGCuGUCg -3'
miRNA:   3'- cCAUcu----UCAGCGC-CUU-GCGCUCG-UAG- -5'
16203 5' -52.3 NC_004065.1 + 83598 0.67 0.987101
Target:  5'- cGG-GGAAGaaGaCGGAGCGCGGGCc-- -3'
miRNA:   3'- -CCaUCUUCagC-GCCUUGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 229314 0.67 0.988581
Target:  5'- ---cGgcGUCGCGuuACGaCGGGCAUCu -3'
miRNA:   3'- ccauCuuCAGCGCcuUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 130689 0.67 0.989926
Target:  5'- cGGgcGAGGagGCGGAggagaaggaggcGCGuCGAGCGa- -3'
miRNA:   3'- -CCauCUUCagCGCCU------------UGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 75660 0.67 0.989926
Target:  5'- aGUGGAGGUCggcgagGCGGc-CGCGGGCugauUCu -3'
miRNA:   3'- cCAUCUUCAG------CGCCuuGCGCUCGu---AG- -5'
16203 5' -52.3 NC_004065.1 + 126867 0.67 0.989926
Target:  5'- cGUAGucauuuuguucAGGUCGUGGAacaugaucGCGUGAGCcgCc -3'
miRNA:   3'- cCAUC-----------UUCAGCGCCU--------UGCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 32876 0.67 0.989926
Target:  5'- uGGUcgAGAGG-CGCGccg-GCGAGCGUCu -3'
miRNA:   3'- -CCA--UCUUCaGCGCcuugCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 19470 0.67 0.992243
Target:  5'- gGGgacGGGAGUCgGUGGAGCGCc--CAUCg -3'
miRNA:   3'- -CCa--UCUUCAG-CGCCUUGCGcucGUAG- -5'
16203 5' -52.3 NC_004065.1 + 55766 0.67 0.992243
Target:  5'- aGUGGAAGaUgGCGGucucGGCGCcGAGCAg- -3'
miRNA:   3'- cCAUCUUC-AgCGCC----UUGCG-CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 226124 0.67 0.992243
Target:  5'- aGGcGGggGUCGCcgcguGGAgGCuGGCAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGc----CUUgCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 62109 0.67 0.992243
Target:  5'- cGGUcGuuacgcUCGCGGGAgGCG-GCAUCg -3'
miRNA:   3'- -CCAuCuuc---AGCGCCUUgCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 184819 0.67 0.992243
Target:  5'- cGGUGGcGGUgGCGGcAGCGgCG-GCGUg -3'
miRNA:   3'- -CCAUCuUCAgCGCC-UUGC-GCuCGUAg -5'
16203 5' -52.3 NC_004065.1 + 41121 0.66 0.99323
Target:  5'- aGGUGuccGGGUCGuCGGGcCGUGAGCuUCu -3'
miRNA:   3'- -CCAUc--UUCAGC-GCCUuGCGCUCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 127480 0.66 0.99323
Target:  5'- aGGUGGucGggCGCGG--CGgGAGCGUUg -3'
miRNA:   3'- -CCAUCuuCa-GCGCCuuGCgCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 101033 0.66 0.99323
Target:  5'- ---cGAuuccUCGCGGAACGCGuugaucuuGGCGUCc -3'
miRNA:   3'- ccauCUuc--AGCGCCUUGCGC--------UCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 62237 0.66 0.994115
Target:  5'- gGGaUAGGAGUCGaCGGAGuCGCcuGAGUg-- -3'
miRNA:   3'- -CC-AUCUUCAGC-GCCUU-GCG--CUCGuag -5'
16203 5' -52.3 NC_004065.1 + 38396 0.66 0.994903
Target:  5'- gGGUGGAAuacGUCGgGGAcacggacuucGCGggagaGGGCGUCu -3'
miRNA:   3'- -CCAUCUU---CAGCgCCU----------UGCg----CUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 102977 0.66 0.994903
Target:  5'- cGGUAGuAGUCGCGGcgcccgcccuuGACGagcuuuaggucCGAGCGc- -3'
miRNA:   3'- -CCAUCuUCAGCGCC-----------UUGC-----------GCUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.