miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 19470 0.67 0.992243
Target:  5'- gGGgacGGGAGUCgGUGGAGCGCc--CAUCg -3'
miRNA:   3'- -CCa--UCUUCAG-CGCCUUGCGcucGUAG- -5'
16203 5' -52.3 NC_004065.1 + 184819 0.67 0.992243
Target:  5'- cGGUGGcGGUgGCGGcAGCGgCG-GCGUg -3'
miRNA:   3'- -CCAUCuUCAgCGCC-UUGC-GCuCGUAg -5'
16203 5' -52.3 NC_004065.1 + 32876 0.67 0.989926
Target:  5'- uGGUcgAGAGG-CGCGccg-GCGAGCGUCu -3'
miRNA:   3'- -CCA--UCUUCaGCGCcuugCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 75660 0.67 0.989926
Target:  5'- aGUGGAGGUCggcgagGCGGc-CGCGGGCugauUCu -3'
miRNA:   3'- cCAUCUUCAG------CGCCuuGCGCUCGu---AG- -5'
16203 5' -52.3 NC_004065.1 + 126867 0.67 0.989926
Target:  5'- cGUAGucauuuuguucAGGUCGUGGAacaugaucGCGUGAGCcgCc -3'
miRNA:   3'- cCAUC-----------UUCAGCGCCU--------UGCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 130689 0.67 0.989926
Target:  5'- cGGgcGAGGagGCGGAggagaaggaggcGCGuCGAGCGa- -3'
miRNA:   3'- -CCauCUUCagCGCCU------------UGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 229314 0.67 0.988581
Target:  5'- ---cGgcGUCGCGuuACGaCGGGCAUCu -3'
miRNA:   3'- ccauCuuCAGCGCcuUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 83598 0.67 0.987101
Target:  5'- cGG-GGAAGaaGaCGGAGCGCGGGCc-- -3'
miRNA:   3'- -CCaUCUUCagC-GCCUUGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 146570 0.68 0.985477
Target:  5'- gGGcUAGggGUCGCGGGuaa-GGGgAUCg -3'
miRNA:   3'- -CC-AUCuuCAGCGCCUugcgCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 203840 0.68 0.985477
Target:  5'- ---cGAGGUCGaaaGGGACGCGccGGCAc- -3'
miRNA:   3'- ccauCUUCAGCg--CCUUGCGC--UCGUag -5'
16203 5' -52.3 NC_004065.1 + 215378 0.68 0.985477
Target:  5'- aGUAaauuuuAGUCGCGcGAGaCGCGAGCuGUCg -3'
miRNA:   3'- cCAUcu----UCAGCGC-CUU-GCGCUCG-UAG- -5'
16203 5' -52.3 NC_004065.1 + 27136 0.68 0.985477
Target:  5'- aGGUGGAAGggcuaCGCGaGAgGCGCGGGgAacUCg -3'
miRNA:   3'- -CCAUCUUCa----GCGC-CU-UGCGCUCgU--AG- -5'
16203 5' -52.3 NC_004065.1 + 136270 0.68 0.983701
Target:  5'- uGGUcugGGGAGccaaGCGGggUGCGAGgaAUCg -3'
miRNA:   3'- -CCA---UCUUCag--CGCCuuGCGCUCg-UAG- -5'
16203 5' -52.3 NC_004065.1 + 205747 0.68 0.983701
Target:  5'- ------uGUCGCGGGGcCGCGAGCcgUg -3'
miRNA:   3'- ccaucuuCAGCGCCUU-GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 17790 0.68 0.983701
Target:  5'- gGGUGGccGUCGCGuuuGGCGCGAucccGCGUg -3'
miRNA:   3'- -CCAUCuuCAGCGCc--UUGCGCU----CGUAg -5'
16203 5' -52.3 NC_004065.1 + 211392 0.68 0.981766
Target:  5'- cGGcAGAGGUgGCGGAggcgggggaaACGUGGGCc-- -3'
miRNA:   3'- -CCaUCUUCAgCGCCU----------UGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 121119 0.68 0.981766
Target:  5'- ------cGUCGCGGAggcGCGCGAGUuuuUCu -3'
miRNA:   3'- ccaucuuCAGCGCCU---UGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 171982 0.68 0.981766
Target:  5'- cGG-AGggGUCGuCGuGAACGaCGAcCAUCa -3'
miRNA:   3'- -CCaUCuuCAGC-GC-CUUGC-GCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 122102 0.68 0.981766
Target:  5'- cGGgGGAcacGUCGCagaccaGGAACGCGGGCugcUCg -3'
miRNA:   3'- -CCaUCUu--CAGCG------CCUUGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 15181 0.68 0.979662
Target:  5'- uGUGGGA--CGCGGAcaACGCGAGgCGUUu -3'
miRNA:   3'- cCAUCUUcaGCGCCU--UGCGCUC-GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.