miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 191201 0.68 0.979662
Target:  5'- aGGcUGGggGUCGgGGAGaucaGCGAGaggCg -3'
miRNA:   3'- -CC-AUCuuCAGCgCCUUg---CGCUCguaG- -5'
16203 5' -52.3 NC_004065.1 + 99524 0.68 0.977384
Target:  5'- --gAGGAGgacgCGCGGcuCGaUGAGCAUCu -3'
miRNA:   3'- ccaUCUUCa---GCGCCuuGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 32938 0.68 0.977384
Target:  5'- cGGUcGGcuccCGCGcGGAUGCGGGCGUCg -3'
miRNA:   3'- -CCAuCUuca-GCGC-CUUGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 188613 0.68 0.977384
Target:  5'- --cGGucGUCGCGGAGaacuucCGCGAGUcgCu -3'
miRNA:   3'- ccaUCuuCAGCGCCUU------GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 103703 0.68 0.977384
Target:  5'- cGGUGGgcGgCGgGGAGCGCcuggcGGGCGUg -3'
miRNA:   3'- -CCAUCuuCaGCgCCUUGCG-----CUCGUAg -5'
16203 5' -52.3 NC_004065.1 + 167325 0.69 0.974924
Target:  5'- uGGUGGuGGUgacgaccugcgUGCGGAACGCG-GCGc- -3'
miRNA:   3'- -CCAUCuUCA-----------GCGCCUUGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 139834 0.69 0.974924
Target:  5'- cGGccuGGAGUCcCGGGAgGCGGGCGa- -3'
miRNA:   3'- -CCau-CUUCAGcGCCUUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 107447 0.69 0.972273
Target:  5'- --aGGAGGUCGUGGu---CGGGCGUCu -3'
miRNA:   3'- ccaUCUUCAGCGCCuugcGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 208729 0.69 0.972273
Target:  5'- aGUAGAAc-CGCGGGAacgGCGAGCAg- -3'
miRNA:   3'- cCAUCUUcaGCGCCUUg--CGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 91113 0.69 0.969427
Target:  5'- aGUAGAAGagcgccUCGCuGAGCGCGGG-GUCg -3'
miRNA:   3'- cCAUCUUC------AGCGcCUUGCGCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 127239 0.69 0.966378
Target:  5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3'
miRNA:   3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 198054 0.69 0.966378
Target:  5'- gGGgauGGAGUUGCGGA-CGCaguuGCGUCu -3'
miRNA:   3'- -CCau-CUUCAGCGCCUuGCGcu--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 211467 0.69 0.96312
Target:  5'- cGG-AGGAGUCGcCGGAGagguCGUcGGCGUCg -3'
miRNA:   3'- -CCaUCUUCAGC-GCCUU----GCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 229671 0.69 0.96312
Target:  5'- aGGUGGgcGUCGgGGcGCGCGuccGC-UCg -3'
miRNA:   3'- -CCAUCuuCAGCgCCuUGCGCu--CGuAG- -5'
16203 5' -52.3 NC_004065.1 + 74650 0.69 0.959649
Target:  5'- gGGUcuGAGGUC-CGGAcCGCGGcGCGUCc -3'
miRNA:   3'- -CCAu-CUUCAGcGCCUuGCGCU-CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 194105 0.7 0.955959
Target:  5'- aGGgAGgcGUCGCaGAccCGCGGGUAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGcCUu-GCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 24040 0.7 0.952046
Target:  5'- --cAGAGGUCGUcggugaGGAugGUGAGCGg- -3'
miRNA:   3'- ccaUCUUCAGCG------CCUugCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 138447 0.7 0.947907
Target:  5'- --gAGggGUCGgGGcGgGCGAGCAg- -3'
miRNA:   3'- ccaUCuuCAGCgCCuUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 90728 0.7 0.938936
Target:  5'- cGUuGGAGUCGCaGAGCGCucgGAGCAg- -3'
miRNA:   3'- cCAuCUUCAGCGcCUUGCG---CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 194080 0.71 0.934101
Target:  5'- -aUAGAAGUCGCGGu-CG-GAGCAc- -3'
miRNA:   3'- ccAUCUUCAGCGCCuuGCgCUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.