miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 6424 0.71 0.917613
Target:  5'- uGGUGGAuagauacagguuuAGUCG-GGAGCGUGcAGCGUg -3'
miRNA:   3'- -CCAUCU-------------UCAGCgCCUUGCGC-UCGUAg -5'
16203 5' -52.3 NC_004065.1 + 15181 0.68 0.979662
Target:  5'- uGUGGGA--CGCGGAcaACGCGAGgCGUUu -3'
miRNA:   3'- cCAUCUUcaGCGCCU--UGCGCUC-GUAG- -5'
16203 5' -52.3 NC_004065.1 + 17790 0.68 0.983701
Target:  5'- gGGUGGccGUCGCGuuuGGCGCGAucccGCGUg -3'
miRNA:   3'- -CCAUCuuCAGCGCc--UUGCGCU----CGUAg -5'
16203 5' -52.3 NC_004065.1 + 18025 0.66 0.995604
Target:  5'- cGUAGAGGUCugguucguCGGGcuGCGCGAG-GUCg -3'
miRNA:   3'- cCAUCUUCAGc-------GCCU--UGCGCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 19470 0.67 0.992243
Target:  5'- gGGgacGGGAGUCgGUGGAGCGCc--CAUCg -3'
miRNA:   3'- -CCa--UCUUCAG-CGCCUUGCGcucGUAG- -5'
16203 5' -52.3 NC_004065.1 + 21676 0.66 0.996224
Target:  5'- -aUAGAcGGUCGCGGucagauACGCGAccGCgAUCc -3'
miRNA:   3'- ccAUCU-UCAGCGCCu-----UGCGCU--CG-UAG- -5'
16203 5' -52.3 NC_004065.1 + 24040 0.7 0.952046
Target:  5'- --cAGAGGUCGUcggugaGGAugGUGAGCGg- -3'
miRNA:   3'- ccaUCUUCAGCG------CCUugCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 27136 0.68 0.985477
Target:  5'- aGGUGGAAGggcuaCGCGaGAgGCGCGGGgAacUCg -3'
miRNA:   3'- -CCAUCUUCa----GCGC-CU-UGCGCUCgU--AG- -5'
16203 5' -52.3 NC_004065.1 + 32876 0.67 0.989926
Target:  5'- uGGUcgAGAGG-CGCGccg-GCGAGCGUCu -3'
miRNA:   3'- -CCA--UCUUCaGCGCcuugCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 32938 0.68 0.977384
Target:  5'- cGGUcGGcuccCGCGcGGAUGCGGGCGUCg -3'
miRNA:   3'- -CCAuCUuca-GCGC-CUUGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 38396 0.66 0.994903
Target:  5'- gGGUGGAAuacGUCGgGGAcacggacuucGCGggagaGGGCGUCu -3'
miRNA:   3'- -CCAUCUU---CAGCgCCU----------UGCg----CUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 41121 0.66 0.99323
Target:  5'- aGGUGuccGGGUCGuCGGGcCGUGAGCuUCu -3'
miRNA:   3'- -CCAUc--UUCAGC-GCCUuGCGCUCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 51636 0.72 0.893676
Target:  5'- gGGcAGAAGUCGCGucggauccaggaGAGCGCGGGUuccuugaugGUCa -3'
miRNA:   3'- -CCaUCUUCAGCGC------------CUUGCGCUCG---------UAG- -5'
16203 5' -52.3 NC_004065.1 + 55766 0.67 0.992243
Target:  5'- aGUGGAAGaUgGCGGucucGGCGCcGAGCAg- -3'
miRNA:   3'- cCAUCUUC-AgCGCC----UUGCG-CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 62109 0.67 0.992243
Target:  5'- cGGUcGuuacgcUCGCGGGAgGCG-GCAUCg -3'
miRNA:   3'- -CCAuCuuc---AGCGCCUUgCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 62237 0.66 0.994115
Target:  5'- gGGaUAGGAGUCGaCGGAGuCGCcuGAGUg-- -3'
miRNA:   3'- -CC-AUCUUCAGC-GCCUU-GCG--CUCGuag -5'
16203 5' -52.3 NC_004065.1 + 63071 0.66 0.994903
Target:  5'- --cAGGAGUCGcCGGucgccggcgAGCGaCGGGCGUUg -3'
miRNA:   3'- ccaUCUUCAGC-GCC---------UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 70397 0.76 0.694856
Target:  5'- --gAGcAAGUaCGCGGAgcugaACGCGAGCAUCc -3'
miRNA:   3'- ccaUC-UUCA-GCGCCU-----UGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 74650 0.69 0.959649
Target:  5'- gGGUcuGAGGUC-CGGAcCGCGGcGCGUCc -3'
miRNA:   3'- -CCAu-CUUCAGcGCCUuGCGCU-CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 75660 0.67 0.989926
Target:  5'- aGUGGAGGUCggcgagGCGGc-CGCGGGCugauUCu -3'
miRNA:   3'- cCAUCUUCAG------CGCCuuGCGCUCGu---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.