miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 78587 0.66 0.994903
Target:  5'- gGGUcGAcGUCGCcgucGAACGCGA-CGUCg -3'
miRNA:   3'- -CCAuCUuCAGCGc---CUUGCGCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 78880 0.77 0.674744
Target:  5'- --cAGguGUCGCGGAGCGCGuGCAc- -3'
miRNA:   3'- ccaUCuuCAGCGCCUUGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 83598 0.67 0.987101
Target:  5'- cGG-GGAAGaaGaCGGAGCGCGGGCc-- -3'
miRNA:   3'- -CCaUCUUCagC-GCCUUGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 90728 0.7 0.938936
Target:  5'- cGUuGGAGUCGCaGAGCGCucgGAGCAg- -3'
miRNA:   3'- cCAuCUUCAGCGcCUUGCG---CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 91113 0.69 0.969427
Target:  5'- aGUAGAAGagcgccUCGCuGAGCGCGGG-GUCg -3'
miRNA:   3'- cCAUCUUC------AGCGcCUUGCGCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 99524 0.68 0.977384
Target:  5'- --gAGGAGgacgCGCGGcuCGaUGAGCAUCu -3'
miRNA:   3'- ccaUCUUCa---GCGCCuuGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 101033 0.66 0.99323
Target:  5'- ---cGAuuccUCGCGGAACGCGuugaucuuGGCGUCc -3'
miRNA:   3'- ccauCUuc--AGCGCCUUGCGC--------UCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 102977 0.66 0.994903
Target:  5'- cGGUAGuAGUCGCGGcgcccgcccuuGACGagcuuuaggucCGAGCGc- -3'
miRNA:   3'- -CCAUCuUCAGCGCC-----------UUGC-----------GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 103703 0.68 0.977384
Target:  5'- cGGUGGgcGgCGgGGAGCGCcuggcGGGCGUg -3'
miRNA:   3'- -CCAUCuuCaGCgCCUUGCG-----CUCGUAg -5'
16203 5' -52.3 NC_004065.1 + 107447 0.69 0.972273
Target:  5'- --aGGAGGUCGUGGu---CGGGCGUCu -3'
miRNA:   3'- ccaUCUUCAGCGCCuugcGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 110833 0.66 0.995604
Target:  5'- --cAGGcaccAGU-GCGGGGCGCGGGCcgCc -3'
miRNA:   3'- ccaUCU----UCAgCGCCUUGCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 116578 0.66 0.996224
Target:  5'- aGGgGGAAuGUCGCaGGGcgaACGUGAucGCGUCu -3'
miRNA:   3'- -CCaUCUU-CAGCG-CCU---UGCGCU--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 121119 0.68 0.981766
Target:  5'- ------cGUCGCGGAggcGCGCGAGUuuuUCu -3'
miRNA:   3'- ccaucuuCAGCGCCU---UGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 122102 0.68 0.981766
Target:  5'- cGGgGGAcacGUCGCagaccaGGAACGCGGGCugcUCg -3'
miRNA:   3'- -CCaUCUu--CAGCG------CCUUGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 126867 0.67 0.989926
Target:  5'- cGUAGucauuuuguucAGGUCGUGGAacaugaucGCGUGAGCcgCc -3'
miRNA:   3'- cCAUC-----------UUCAGCGCCU--------UGCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 127239 0.69 0.966378
Target:  5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3'
miRNA:   3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 127480 0.66 0.99323
Target:  5'- aGGUGGucGggCGCGG--CGgGAGCGUUg -3'
miRNA:   3'- -CCAUCuuCa-GCGCCuuGCgCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 130689 0.67 0.989926
Target:  5'- cGGgcGAGGagGCGGAggagaaggaggcGCGuCGAGCGa- -3'
miRNA:   3'- -CCauCUUCagCGCCU------------UGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 135952 0.66 0.995604
Target:  5'- aGGcgAGAGGcagagcaaaaGCGGAGCGuCGAGCGg- -3'
miRNA:   3'- -CCa-UCUUCag--------CGCCUUGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 136270 0.68 0.983701
Target:  5'- uGGUcugGGGAGccaaGCGGggUGCGAGgaAUCg -3'
miRNA:   3'- -CCA---UCUUCag--CGCCuuGCGCUCg-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.