miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 138447 0.7 0.947907
Target:  5'- --gAGggGUCGgGGcGgGCGAGCAg- -3'
miRNA:   3'- ccaUCuuCAGCgCCuUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 139834 0.69 0.974924
Target:  5'- cGGccuGGAGUCcCGGGAgGCGGGCGa- -3'
miRNA:   3'- -CCau-CUUCAGcGCCUUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 145728 0.71 0.917613
Target:  5'- cGGUGGAGGagGCGGGagcggugaugaguGCGcCGAucGCGUCg -3'
miRNA:   3'- -CCAUCUUCagCGCCU-------------UGC-GCU--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 146570 0.68 0.985477
Target:  5'- gGGcUAGggGUCGCGGGuaa-GGGgAUCg -3'
miRNA:   3'- -CC-AUCuuCAGCGCCUugcgCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 164640 0.66 0.996166
Target:  5'- cGGaGGAacagucgGGUCGCGGcGCGCGucGCcagGUCg -3'
miRNA:   3'- -CCaUCU-------UCAGCGCCuUGCGCu-CG---UAG- -5'
16203 5' -52.3 NC_004065.1 + 164928 0.76 0.704838
Target:  5'- uGGUcacacAGAAGUCGuuGAACGCGuGUAUCu -3'
miRNA:   3'- -CCA-----UCUUCAGCgcCUUGCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 167325 0.69 0.974924
Target:  5'- uGGUGGuGGUgacgaccugcgUGCGGAACGCG-GCGc- -3'
miRNA:   3'- -CCAUCuUCA-----------GCGCCUUGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 171982 0.68 0.981766
Target:  5'- cGG-AGggGUCGuCGuGAACGaCGAcCAUCa -3'
miRNA:   3'- -CCaUCuuCAGC-GC-CUUGC-GCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 172090 0.66 0.995604
Target:  5'- gGGUGGAGGggcCGgGGGAgGCG-GC-UCu -3'
miRNA:   3'- -CCAUCUUCa--GCgCCUUgCGCuCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 179541 0.66 0.996224
Target:  5'- uGUGGGGaccUGCGGugauGACGaCGAGCAUCg -3'
miRNA:   3'- cCAUCUUca-GCGCC----UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 184819 0.67 0.992243
Target:  5'- cGGUGGcGGUgGCGGcAGCGgCG-GCGUg -3'
miRNA:   3'- -CCAUCuUCAgCGCC-UUGC-GCuCGUAg -5'
16203 5' -52.3 NC_004065.1 + 188613 0.68 0.977384
Target:  5'- --cGGucGUCGCGGAGaacuucCGCGAGUcgCu -3'
miRNA:   3'- ccaUCuuCAGCGCCUU------GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 191201 0.68 0.979662
Target:  5'- aGGcUGGggGUCGgGGAGaucaGCGAGaggCg -3'
miRNA:   3'- -CC-AUCuuCAGCgCCUUg---CGCUCguaG- -5'
16203 5' -52.3 NC_004065.1 + 194080 0.71 0.934101
Target:  5'- -aUAGAAGUCGCGGu-CG-GAGCAc- -3'
miRNA:   3'- ccAUCUUCAGCGCCuuGCgCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 194105 0.7 0.955959
Target:  5'- aGGgAGgcGUCGCaGAccCGCGGGUAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGcCUu-GCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 195445 0.71 0.91818
Target:  5'- ---cGgcGUCGCGGAGCGCacggucuGCGUCg -3'
miRNA:   3'- ccauCuuCAGCGCCUUGCGcu-----CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 196814 0.66 0.996224
Target:  5'- cGGUGgGggGUCGUGGucaccugcggcaGGUGCGGGCGa- -3'
miRNA:   3'- -CCAU-CuuCAGCGCC------------UUGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 197207 1.13 0.005556
Target:  5'- cGGUAGAAGUCGCGGAACGCGAGCAUCa -3'
miRNA:   3'- -CCAUCUUCAGCGCCUUGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 198054 0.69 0.966378
Target:  5'- gGGgauGGAGUUGCGGA-CGCaguuGCGUCu -3'
miRNA:   3'- -CCau-CUUCAGCGCCUuGCGcu--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 199466 0.71 0.92903
Target:  5'- ---cGAAGUCGCGGAcgAUGCG-GCAg- -3'
miRNA:   3'- ccauCUUCAGCGCCU--UGCGCuCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.