miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 229671 0.69 0.96312
Target:  5'- aGGUGGgcGUCGgGGcGCGCGuccGC-UCg -3'
miRNA:   3'- -CCAUCuuCAGCgCCuUGCGCu--CGuAG- -5'
16203 5' -52.3 NC_004065.1 + 229314 0.67 0.988581
Target:  5'- ---cGgcGUCGCGuuACGaCGGGCAUCu -3'
miRNA:   3'- ccauCuuCAGCGCcuUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 226124 0.67 0.992243
Target:  5'- aGGcGGggGUCGCcgcguGGAgGCuGGCAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGc----CUUgCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 215378 0.68 0.985477
Target:  5'- aGUAaauuuuAGUCGCGcGAGaCGCGAGCuGUCg -3'
miRNA:   3'- cCAUcu----UCAGCGC-CUU-GCGCUCG-UAG- -5'
16203 5' -52.3 NC_004065.1 + 215359 0.71 0.934101
Target:  5'- uGGUGG-AGUCGaCGGAACGUGuGUcugugacgauGUCg -3'
miRNA:   3'- -CCAUCuUCAGC-GCCUUGCGCuCG----------UAG- -5'
16203 5' -52.3 NC_004065.1 + 211467 0.69 0.96312
Target:  5'- cGG-AGGAGUCGcCGGAGagguCGUcGGCGUCg -3'
miRNA:   3'- -CCaUCUUCAGC-GCCUU----GCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 211392 0.68 0.981766
Target:  5'- cGGcAGAGGUgGCGGAggcgggggaaACGUGGGCc-- -3'
miRNA:   3'- -CCaUCUUCAgCGCCU----------UGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 208729 0.69 0.972273
Target:  5'- aGUAGAAc-CGCGGGAacgGCGAGCAg- -3'
miRNA:   3'- cCAUCUUcaGCGCCUUg--CGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 205747 0.68 0.983701
Target:  5'- ------uGUCGCGGGGcCGCGAGCcgUg -3'
miRNA:   3'- ccaucuuCAGCGCCUU-GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 203840 0.68 0.985477
Target:  5'- ---cGAGGUCGaaaGGGACGCGccGGCAc- -3'
miRNA:   3'- ccauCUUCAGCg--CCUUGCGC--UCGUag -5'
16203 5' -52.3 NC_004065.1 + 200848 0.74 0.82583
Target:  5'- cGGUGGAGuucggcGUCGacgGGGGCGCGGGCGg- -3'
miRNA:   3'- -CCAUCUU------CAGCg--CCUUGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 199466 0.71 0.92903
Target:  5'- ---cGAAGUCGCGGAcgAUGCG-GCAg- -3'
miRNA:   3'- ccauCUUCAGCGCCU--UGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 198054 0.69 0.966378
Target:  5'- gGGgauGGAGUUGCGGA-CGCaguuGCGUCu -3'
miRNA:   3'- -CCau-CUUCAGCGCCUuGCGcu--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 197207 1.13 0.005556
Target:  5'- cGGUAGAAGUCGCGGAACGCGAGCAUCa -3'
miRNA:   3'- -CCAUCUUCAGCGCCUUGCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 196814 0.66 0.996224
Target:  5'- cGGUGgGggGUCGUGGucaccugcggcaGGUGCGGGCGa- -3'
miRNA:   3'- -CCAU-CuuCAGCGCC------------UUGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 195445 0.71 0.91818
Target:  5'- ---cGgcGUCGCGGAGCGCacggucuGCGUCg -3'
miRNA:   3'- ccauCuuCAGCGCCUUGCGcu-----CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 194105 0.7 0.955959
Target:  5'- aGGgAGgcGUCGCaGAccCGCGGGUAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGcCUu-GCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 194080 0.71 0.934101
Target:  5'- -aUAGAAGUCGCGGu-CG-GAGCAc- -3'
miRNA:   3'- ccAUCUUCAGCGCCuuGCgCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 191201 0.68 0.979662
Target:  5'- aGGcUGGggGUCGgGGAGaucaGCGAGaggCg -3'
miRNA:   3'- -CC-AUCuuCAGCgCCUUg---CGCUCguaG- -5'
16203 5' -52.3 NC_004065.1 + 188613 0.68 0.977384
Target:  5'- --cGGucGUCGCGGAGaacuucCGCGAGUcgCu -3'
miRNA:   3'- ccaUCuuCAGCGCCUU------GCGCUCGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.