miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 184819 0.67 0.992243
Target:  5'- cGGUGGcGGUgGCGGcAGCGgCG-GCGUg -3'
miRNA:   3'- -CCAUCuUCAgCGCC-UUGC-GCuCGUAg -5'
16203 5' -52.3 NC_004065.1 + 179541 0.66 0.996224
Target:  5'- uGUGGGGaccUGCGGugauGACGaCGAGCAUCg -3'
miRNA:   3'- cCAUCUUca-GCGCC----UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 172090 0.66 0.995604
Target:  5'- gGGUGGAGGggcCGgGGGAgGCG-GC-UCu -3'
miRNA:   3'- -CCAUCUUCa--GCgCCUUgCGCuCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 171982 0.68 0.981766
Target:  5'- cGG-AGggGUCGuCGuGAACGaCGAcCAUCa -3'
miRNA:   3'- -CCaUCuuCAGC-GC-CUUGC-GCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 167325 0.69 0.974924
Target:  5'- uGGUGGuGGUgacgaccugcgUGCGGAACGCG-GCGc- -3'
miRNA:   3'- -CCAUCuUCA-----------GCGCCUUGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 164928 0.76 0.704838
Target:  5'- uGGUcacacAGAAGUCGuuGAACGCGuGUAUCu -3'
miRNA:   3'- -CCA-----UCUUCAGCgcCUUGCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 164640 0.66 0.996166
Target:  5'- cGGaGGAacagucgGGUCGCGGcGCGCGucGCcagGUCg -3'
miRNA:   3'- -CCaUCU-------UCAGCGCCuUGCGCu-CG---UAG- -5'
16203 5' -52.3 NC_004065.1 + 146570 0.68 0.985477
Target:  5'- gGGcUAGggGUCGCGGGuaa-GGGgAUCg -3'
miRNA:   3'- -CC-AUCuuCAGCGCCUugcgCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 145728 0.71 0.917613
Target:  5'- cGGUGGAGGagGCGGGagcggugaugaguGCGcCGAucGCGUCg -3'
miRNA:   3'- -CCAUCUUCagCGCCU-------------UGC-GCU--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 139834 0.69 0.974924
Target:  5'- cGGccuGGAGUCcCGGGAgGCGGGCGa- -3'
miRNA:   3'- -CCau-CUUCAGcGCCUUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 138447 0.7 0.947907
Target:  5'- --gAGggGUCGgGGcGgGCGAGCAg- -3'
miRNA:   3'- ccaUCuuCAGCgCCuUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 136270 0.68 0.983701
Target:  5'- uGGUcugGGGAGccaaGCGGggUGCGAGgaAUCg -3'
miRNA:   3'- -CCA---UCUUCag--CGCCuuGCGCUCg-UAG- -5'
16203 5' -52.3 NC_004065.1 + 135952 0.66 0.995604
Target:  5'- aGGcgAGAGGcagagcaaaaGCGGAGCGuCGAGCGg- -3'
miRNA:   3'- -CCa-UCUUCag--------CGCCUUGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 130689 0.67 0.989926
Target:  5'- cGGgcGAGGagGCGGAggagaaggaggcGCGuCGAGCGa- -3'
miRNA:   3'- -CCauCUUCagCGCCU------------UGC-GCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 127480 0.66 0.99323
Target:  5'- aGGUGGucGggCGCGG--CGgGAGCGUUg -3'
miRNA:   3'- -CCAUCuuCa-GCGCCuuGCgCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 127239 0.69 0.966378
Target:  5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3'
miRNA:   3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 126867 0.67 0.989926
Target:  5'- cGUAGucauuuuguucAGGUCGUGGAacaugaucGCGUGAGCcgCc -3'
miRNA:   3'- cCAUC-----------UUCAGCGCCU--------UGCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 122102 0.68 0.981766
Target:  5'- cGGgGGAcacGUCGCagaccaGGAACGCGGGCugcUCg -3'
miRNA:   3'- -CCaUCUu--CAGCG------CCUUGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 121119 0.68 0.981766
Target:  5'- ------cGUCGCGGAggcGCGCGAGUuuuUCu -3'
miRNA:   3'- ccaucuuCAGCGCCU---UGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 116578 0.66 0.996224
Target:  5'- aGGgGGAAuGUCGCaGGGcgaACGUGAucGCGUCu -3'
miRNA:   3'- -CCaUCUU-CAGCG-CCU---UGCGCU--CGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.