Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16203 | 5' | -52.3 | NC_004065.1 | + | 17790 | 0.68 | 0.983701 |
Target: 5'- gGGUGGccGUCGCGuuuGGCGCGAucccGCGUg -3' miRNA: 3'- -CCAUCuuCAGCGCc--UUGCGCU----CGUAg -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 229671 | 0.69 | 0.96312 |
Target: 5'- aGGUGGgcGUCGgGGcGCGCGuccGC-UCg -3' miRNA: 3'- -CCAUCuuCAGCgCCuUGCGCu--CGuAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 127239 | 0.69 | 0.966378 |
Target: 5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3' miRNA: 3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 91113 | 0.69 | 0.969427 |
Target: 5'- aGUAGAAGagcgccUCGCuGAGCGCGGG-GUCg -3' miRNA: 3'- cCAUCUUC------AGCGcCUUGCGCUCgUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 107447 | 0.69 | 0.972273 |
Target: 5'- --aGGAGGUCGUGGu---CGGGCGUCu -3' miRNA: 3'- ccaUCUUCAGCGCCuugcGCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 208729 | 0.69 | 0.972273 |
Target: 5'- aGUAGAAc-CGCGGGAacgGCGAGCAg- -3' miRNA: 3'- cCAUCUUcaGCGCCUUg--CGCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 167325 | 0.69 | 0.974924 |
Target: 5'- uGGUGGuGGUgacgaccugcgUGCGGAACGCG-GCGc- -3' miRNA: 3'- -CCAUCuUCA-----------GCGCCUUGCGCuCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 32938 | 0.68 | 0.977384 |
Target: 5'- cGGUcGGcuccCGCGcGGAUGCGGGCGUCg -3' miRNA: 3'- -CCAuCUuca-GCGC-CUUGCGCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 122102 | 0.68 | 0.981766 |
Target: 5'- cGGgGGAcacGUCGCagaccaGGAACGCGGGCugcUCg -3' miRNA: 3'- -CCaUCUu--CAGCG------CCUUGCGCUCGu--AG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 74650 | 0.69 | 0.959649 |
Target: 5'- gGGUcuGAGGUC-CGGAcCGCGGcGCGUCc -3' miRNA: 3'- -CCAu-CUUCAGcGCCUuGCGCU-CGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 194105 | 0.7 | 0.955959 |
Target: 5'- aGGgAGgcGUCGCaGAccCGCGGGUAUCg -3' miRNA: 3'- -CCaUCuuCAGCGcCUu-GCGCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 24040 | 0.7 | 0.952046 |
Target: 5'- --cAGAGGUCGUcggugaGGAugGUGAGCGg- -3' miRNA: 3'- ccaUCUUCAGCG------CCUugCGCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 78880 | 0.77 | 0.674744 |
Target: 5'- --cAGguGUCGCGGAGCGCGuGCAc- -3' miRNA: 3'- ccaUCuuCAGCGCCUUGCGCuCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 70397 | 0.76 | 0.694856 |
Target: 5'- --gAGcAAGUaCGCGGAgcugaACGCGAGCAUCc -3' miRNA: 3'- ccaUC-UUCA-GCGCCU-----UGCGCUCGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 200848 | 0.74 | 0.82583 |
Target: 5'- cGGUGGAGuucggcGUCGacgGGGGCGCGGGCGg- -3' miRNA: 3'- -CCAUCUU------CAGCg--CCUUGCGCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 51636 | 0.72 | 0.893676 |
Target: 5'- gGGcAGAAGUCGCGucggauccaggaGAGCGCGGGUuccuugaugGUCa -3' miRNA: 3'- -CCaUCUUCAGCGC------------CUUGCGCUCG---------UAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 145728 | 0.71 | 0.917613 |
Target: 5'- cGGUGGAGGagGCGGGagcggugaugaguGCGcCGAucGCGUCg -3' miRNA: 3'- -CCAUCUUCagCGCCU-------------UGC-GCU--CGUAG- -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 199466 | 0.71 | 0.92903 |
Target: 5'- ---cGAAGUCGCGGAcgAUGCG-GCAg- -3' miRNA: 3'- ccauCUUCAGCGCCU--UGCGCuCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 194080 | 0.71 | 0.934101 |
Target: 5'- -aUAGAAGUCGCGGu-CG-GAGCAc- -3' miRNA: 3'- ccAUCUUCAGCGCCuuGCgCUCGUag -5' |
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16203 | 5' | -52.3 | NC_004065.1 | + | 138447 | 0.7 | 0.947907 |
Target: 5'- --gAGggGUCGgGGcGgGCGAGCAg- -3' miRNA: 3'- ccaUCuuCAGCgCCuUgCGCUCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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