miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 164928 0.76 0.704838
Target:  5'- uGGUcacacAGAAGUCGuuGAACGCGuGUAUCu -3'
miRNA:   3'- -CCA-----UCUUCAGCgcCUUGCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 136270 0.68 0.983701
Target:  5'- uGGUcugGGGAGccaaGCGGggUGCGAGgaAUCg -3'
miRNA:   3'- -CCA---UCUUCag--CGCCuuGCGCUCg-UAG- -5'
16203 5' -52.3 NC_004065.1 + 203840 0.68 0.985477
Target:  5'- ---cGAGGUCGaaaGGGACGCGccGGCAc- -3'
miRNA:   3'- ccauCUUCAGCg--CCUUGCGC--UCGUag -5'
16203 5' -52.3 NC_004065.1 + 179541 0.66 0.996224
Target:  5'- uGUGGGGaccUGCGGugauGACGaCGAGCAUCg -3'
miRNA:   3'- cCAUCUUca-GCGCC----UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 90728 0.7 0.938936
Target:  5'- cGUuGGAGUCGCaGAGCGCucgGAGCAg- -3'
miRNA:   3'- cCAuCUUCAGCGcCUUGCG---CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 211467 0.69 0.96312
Target:  5'- cGG-AGGAGUCGcCGGAGagguCGUcGGCGUCg -3'
miRNA:   3'- -CCaUCUUCAGC-GCCUU----GCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 139834 0.69 0.974924
Target:  5'- cGGccuGGAGUCcCGGGAgGCGGGCGa- -3'
miRNA:   3'- -CCau-CUUCAGcGCCUUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 99524 0.68 0.977384
Target:  5'- --gAGGAGgacgCGCGGcuCGaUGAGCAUCu -3'
miRNA:   3'- ccaUCUUCa---GCGCCuuGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 191201 0.68 0.979662
Target:  5'- aGGcUGGggGUCGgGGAGaucaGCGAGaggCg -3'
miRNA:   3'- -CC-AUCuuCAGCgCCUUg---CGCUCguaG- -5'
16203 5' -52.3 NC_004065.1 + 205747 0.68 0.983701
Target:  5'- ------uGUCGCGGGGcCGCGAGCcgUg -3'
miRNA:   3'- ccaucuuCAGCGCCUU-GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 121119 0.68 0.981766
Target:  5'- ------cGUCGCGGAggcGCGCGAGUuuuUCu -3'
miRNA:   3'- ccaucuuCAGCGCCU---UGCGCUCGu--AG- -5'
16203 5' -52.3 NC_004065.1 + 188613 0.68 0.977384
Target:  5'- --cGGucGUCGCGGAGaacuucCGCGAGUcgCu -3'
miRNA:   3'- ccaUCuuCAGCGCCUU------GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 6424 0.71 0.917613
Target:  5'- uGGUGGAuagauacagguuuAGUCG-GGAGCGUGcAGCGUg -3'
miRNA:   3'- -CCAUCU-------------UCAGCgCCUUGCGC-UCGUAg -5'
16203 5' -52.3 NC_004065.1 + 171982 0.68 0.981766
Target:  5'- cGG-AGggGUCGuCGuGAACGaCGAcCAUCa -3'
miRNA:   3'- -CCaUCuuCAGC-GC-CUUGC-GCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 195445 0.71 0.91818
Target:  5'- ---cGgcGUCGCGGAGCGCacggucuGCGUCg -3'
miRNA:   3'- ccauCuuCAGCGCCUUGCGcu-----CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 103703 0.68 0.977384
Target:  5'- cGGUGGgcGgCGgGGAGCGCcuggcGGGCGUg -3'
miRNA:   3'- -CCAUCuuCaGCgCCUUGCG-----CUCGUAg -5'
16203 5' -52.3 NC_004065.1 + 211392 0.68 0.981766
Target:  5'- cGGcAGAGGUgGCGGAggcgggggaaACGUGGGCc-- -3'
miRNA:   3'- -CCaUCUUCAgCGCCU----------UGCGCUCGuag -5'
16203 5' -52.3 NC_004065.1 + 27136 0.68 0.985477
Target:  5'- aGGUGGAAGggcuaCGCGaGAgGCGCGGGgAacUCg -3'
miRNA:   3'- -CCAUCUUCa----GCGC-CU-UGCGCUCgU--AG- -5'
16203 5' -52.3 NC_004065.1 + 215359 0.71 0.934101
Target:  5'- uGGUGG-AGUCGaCGGAACGUGuGUcugugacgauGUCg -3'
miRNA:   3'- -CCAUCuUCAGC-GCCUUGCGCuCG----------UAG- -5'
16203 5' -52.3 NC_004065.1 + 198054 0.69 0.966378
Target:  5'- gGGgauGGAGUUGCGGA-CGCaguuGCGUCu -3'
miRNA:   3'- -CCau-CUUCAGCGCCUuGCGcu--CGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.