miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16203 5' -52.3 NC_004065.1 + 146570 0.68 0.985477
Target:  5'- gGGcUAGggGUCGCGGGuaa-GGGgAUCg -3'
miRNA:   3'- -CC-AUCuuCAGCGCCUugcgCUCgUAG- -5'
16203 5' -52.3 NC_004065.1 + 63071 0.66 0.994903
Target:  5'- --cAGGAGUCGcCGGucgccggcgAGCGaCGGGCGUUg -3'
miRNA:   3'- ccaUCUUCAGC-GCC---------UUGC-GCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 203840 0.68 0.985477
Target:  5'- ---cGAGGUCGaaaGGGACGCGccGGCAc- -3'
miRNA:   3'- ccauCUUCAGCg--CCUUGCGC--UCGUag -5'
16203 5' -52.3 NC_004065.1 + 211467 0.69 0.96312
Target:  5'- cGG-AGGAGUCGcCGGAGagguCGUcGGCGUCg -3'
miRNA:   3'- -CCaUCUUCAGC-GCCUU----GCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 38396 0.66 0.994903
Target:  5'- gGGUGGAAuacGUCGgGGAcacggacuucGCGggagaGGGCGUCu -3'
miRNA:   3'- -CCAUCUU---CAGCgCCU----------UGCg----CUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 32876 0.67 0.989926
Target:  5'- uGGUcgAGAGG-CGCGccg-GCGAGCGUCu -3'
miRNA:   3'- -CCA--UCUUCaGCGCcuugCGCUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 78587 0.66 0.994903
Target:  5'- gGGUcGAcGUCGCcgucGAACGCGA-CGUCg -3'
miRNA:   3'- -CCAuCUuCAGCGc---CUUGCGCUcGUAG- -5'
16203 5' -52.3 NC_004065.1 + 21676 0.66 0.996224
Target:  5'- -aUAGAcGGUCGCGGucagauACGCGAccGCgAUCc -3'
miRNA:   3'- ccAUCU-UCAGCGCCu-----UGCGCU--CG-UAG- -5'
16203 5' -52.3 NC_004065.1 + 90728 0.7 0.938936
Target:  5'- cGUuGGAGUCGCaGAGCGCucgGAGCAg- -3'
miRNA:   3'- cCAuCUUCAGCGcCUUGCG---CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 215359 0.71 0.934101
Target:  5'- uGGUGG-AGUCGaCGGAACGUGuGUcugugacgauGUCg -3'
miRNA:   3'- -CCAUCuUCAGC-GCCUUGCGCuCG----------UAG- -5'
16203 5' -52.3 NC_004065.1 + 139834 0.69 0.974924
Target:  5'- cGGccuGGAGUCcCGGGAgGCGGGCGa- -3'
miRNA:   3'- -CCau-CUUCAGcGCCUUgCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 188613 0.68 0.977384
Target:  5'- --cGGucGUCGCGGAGaacuucCGCGAGUcgCu -3'
miRNA:   3'- ccaUCuuCAGCGCCUU------GCGCUCGuaG- -5'
16203 5' -52.3 NC_004065.1 + 198054 0.69 0.966378
Target:  5'- gGGgauGGAGUUGCGGA-CGCaguuGCGUCu -3'
miRNA:   3'- -CCau-CUUCAGCGCCUuGCGcu--CGUAG- -5'
16203 5' -52.3 NC_004065.1 + 199466 0.71 0.92903
Target:  5'- ---cGAAGUCGCGGAcgAUGCG-GCAg- -3'
miRNA:   3'- ccauCUUCAGCGCCU--UGCGCuCGUag -5'
16203 5' -52.3 NC_004065.1 + 41121 0.66 0.99323
Target:  5'- aGGUGuccGGGUCGuCGGGcCGUGAGCuUCu -3'
miRNA:   3'- -CCAUc--UUCAGC-GCCUuGCGCUCGuAG- -5'
16203 5' -52.3 NC_004065.1 + 62109 0.67 0.992243
Target:  5'- cGGUcGuuacgcUCGCGGGAgGCG-GCAUCg -3'
miRNA:   3'- -CCAuCuuc---AGCGCCUUgCGCuCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 226124 0.67 0.992243
Target:  5'- aGGcGGggGUCGCcgcguGGAgGCuGGCAUCg -3'
miRNA:   3'- -CCaUCuuCAGCGc----CUUgCGcUCGUAG- -5'
16203 5' -52.3 NC_004065.1 + 55766 0.67 0.992243
Target:  5'- aGUGGAAGaUgGCGGucucGGCGCcGAGCAg- -3'
miRNA:   3'- cCAUCUUC-AgCGCC----UUGCG-CUCGUag -5'
16203 5' -52.3 NC_004065.1 + 127239 0.69 0.966378
Target:  5'- cGGgcGcGGUgGCGGGgaugaugaGCGCGAGCGa- -3'
miRNA:   3'- -CCauCuUCAgCGCCU--------UGCGCUCGUag -5'
16203 5' -52.3 NC_004065.1 + 91113 0.69 0.969427
Target:  5'- aGUAGAAGagcgccUCGCuGAGCGCGGG-GUCg -3'
miRNA:   3'- cCAUCUUC------AGCGcCUUGCGCUCgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.