miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16204 3' -55.9 NC_004065.1 + 109906 0.66 0.96969
Target:  5'- gGGUCCCG-GCUcGUCcGCCGCGGc-- -3'
miRNA:   3'- -CCGGGGCuUGAaCAGcCGGUGCUagu -5'
16204 3' -55.9 NC_004065.1 + 56620 0.66 0.96969
Target:  5'- cGGCCgCGGAUguggaugcggUGgcagCGGCCGCGG-CAc -3'
miRNA:   3'- -CCGGgGCUUGa---------ACa---GCCGGUGCUaGU- -5'
16204 3' -55.9 NC_004065.1 + 222091 0.66 0.96969
Target:  5'- aGGCguuCCCGAuacacuGCUUGUCG--CGCGAUCGa -3'
miRNA:   3'- -CCG---GGGCU------UGAACAGCcgGUGCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 145986 0.66 0.96969
Target:  5'- cGUCCaacauCUUGUCGGCCAucuacgagagacCGGUCAc -3'
miRNA:   3'- cCGGGgcuu-GAACAGCCGGU------------GCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 77971 0.66 0.966743
Target:  5'- aGCCCCGAGac-GcUGGCCGCGG-CGa -3'
miRNA:   3'- cCGGGGCUUgaaCaGCCGGUGCUaGU- -5'
16204 3' -55.9 NC_004065.1 + 196397 0.66 0.966743
Target:  5'- cGCCCCGAACgcgaUGgccUUGGCCAUGc--- -3'
miRNA:   3'- cCGGGGCUUGa---AC---AGCCGGUGCuagu -5'
16204 3' -55.9 NC_004065.1 + 100130 0.66 0.966437
Target:  5'- aGGCCCCGAucaggGUCcGCCGCagcgcgcggcacaGGUCGa -3'
miRNA:   3'- -CCGGGGCUugaa-CAGcCGGUG-------------CUAGU- -5'
16204 3' -55.9 NC_004065.1 + 32723 0.66 0.963599
Target:  5'- aGGUCCaUGAACUUGgCGGCguCGcgCGa -3'
miRNA:   3'- -CCGGG-GCUUGAACaGCCGguGCuaGU- -5'
16204 3' -55.9 NC_004065.1 + 127197 0.66 0.962946
Target:  5'- gGGCCCUcggGGACgUGguucgggagcggCGGCCGCGAggaUCGg -3'
miRNA:   3'- -CCGGGG---CUUGaACa-----------GCCGGUGCU---AGU- -5'
16204 3' -55.9 NC_004065.1 + 118272 0.66 0.960253
Target:  5'- cGGCCUCGAcguACUUGaCGaCCACG-UCGc -3'
miRNA:   3'- -CCGGGGCU---UGAACaGCcGGUGCuAGU- -5'
16204 3' -55.9 NC_004065.1 + 138751 0.66 0.960253
Target:  5'- aGGCCgUGAagguGCagGUCGGC-GCGGUCGa -3'
miRNA:   3'- -CCGGgGCU----UGaaCAGCCGgUGCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 195234 0.66 0.960253
Target:  5'- gGGCUugCCGAGgUaGUgcaccaccgCGGCCGCGAUCu -3'
miRNA:   3'- -CCGG--GGCUUgAaCA---------GCCGGUGCUAGu -5'
16204 3' -55.9 NC_004065.1 + 167945 0.66 0.960253
Target:  5'- uGGCagcgucggCGAGCUUcGUCGGCuugucCACGAUCGa -3'
miRNA:   3'- -CCGgg------GCUUGAA-CAGCCG-----GUGCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 25236 0.66 0.960253
Target:  5'- aGCCCgGGAuCgaGUCGGCUAUGAg-- -3'
miRNA:   3'- cCGGGgCUU-GaaCAGCCGGUGCUagu -5'
16204 3' -55.9 NC_004065.1 + 123974 0.66 0.956702
Target:  5'- uGUCCCGGucCUccUUGGUCACGAUCGg -3'
miRNA:   3'- cCGGGGCUu-GAacAGCCGGUGCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 94623 0.66 0.956702
Target:  5'- cGGCUCCuGACgggGUCGGgCGCGGcCGg -3'
miRNA:   3'- -CCGGGGcUUGaa-CAGCCgGUGCUaGU- -5'
16204 3' -55.9 NC_004065.1 + 148412 0.66 0.955595
Target:  5'- aGCCCCGAgaagggcaaggccgGCU--UCGGCaccuccaaCACGGUCAa -3'
miRNA:   3'- cCGGGGCU--------------UGAacAGCCG--------GUGCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 109597 0.66 0.952939
Target:  5'- aGGgCCCGGACgagGUCGGagaGCGAg-- -3'
miRNA:   3'- -CCgGGGCUUGaa-CAGCCgg-UGCUagu -5'
16204 3' -55.9 NC_004065.1 + 44276 0.66 0.952939
Target:  5'- cGCCCC--ACaUGUgGGCC-CGGUCGa -3'
miRNA:   3'- cCGGGGcuUGaACAgCCGGuGCUAGU- -5'
16204 3' -55.9 NC_004065.1 + 209566 0.66 0.952551
Target:  5'- aGGCCCggccggcugcuggCGGGCgUG-CGGUCAgGAUCAg -3'
miRNA:   3'- -CCGGG-------------GCUUGaACaGCCGGUgCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.