miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16205 5' -57.4 NC_004065.1 + 225375 0.66 0.924866
Target:  5'- cUGGACgcccgcggCGGGGgcgcuggCGCugAuggUGCCGCu -3'
miRNA:   3'- aACUUGa-------GCCCCa------GCGugU---ACGGCGc -5'
16205 5' -57.4 NC_004065.1 + 81997 0.66 0.919497
Target:  5'- --cGGCggCGGGGaaggCGCcCGUGCCGCu -3'
miRNA:   3'- aacUUGa-GCCCCa---GCGuGUACGGCGc -5'
16205 5' -57.4 NC_004065.1 + 78233 0.66 0.913902
Target:  5'- aUGAGCgCGGagaGGaCGUcCAUGCCGCGc -3'
miRNA:   3'- aACUUGaGCC---CCaGCGuGUACGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 57393 0.66 0.913902
Target:  5'- -gGAGCUCGcGGUCGuCACG-GCgGCa -3'
miRNA:   3'- aaCUUGAGCcCCAGC-GUGUaCGgCGc -5'
16205 5' -57.4 NC_004065.1 + 211151 0.66 0.908083
Target:  5'- ----gUUCGGGGgggagCGgGCGUGCCGgGa -3'
miRNA:   3'- aacuuGAGCCCCa----GCgUGUACGGCgC- -5'
16205 5' -57.4 NC_004065.1 + 98846 0.66 0.902042
Target:  5'- -cGAugUCagGGGGUCGguCAUauccagacGCCGCu -3'
miRNA:   3'- aaCUugAG--CCCCAGCguGUA--------CGGCGc -5'
16205 5' -57.4 NC_004065.1 + 90293 0.66 0.895781
Target:  5'- cUUGAucuGCUUGGGGaUGCccgGCA-GCCGCGu -3'
miRNA:   3'- -AACU---UGAGCCCCaGCG---UGUaCGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 229450 0.66 0.895781
Target:  5'- ------aCGGGGUgGCGC-UGCCGCc -3'
miRNA:   3'- aacuugaGCCCCAgCGUGuACGGCGc -5'
16205 5' -57.4 NC_004065.1 + 144962 0.66 0.895781
Target:  5'- aUGAGCUgcaCGGGGUCcaggaACA-GCUGCGg -3'
miRNA:   3'- aACUUGA---GCCCCAGcg---UGUaCGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 139000 0.67 0.889303
Target:  5'- -cGAGCUCGGgacGGUgGC-CAUGgaCCGCGu -3'
miRNA:   3'- aaCUUGAGCC---CCAgCGuGUAC--GGCGC- -5'
16205 5' -57.4 NC_004065.1 + 117091 0.67 0.889303
Target:  5'- -gGAGauaaCGGGuUCGCgaGCGUGCCGCGc -3'
miRNA:   3'- aaCUUga--GCCCcAGCG--UGUACGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 107448 0.67 0.889303
Target:  5'- -gGAGgUCGuGGUCGgGCGucUGCCGCa -3'
miRNA:   3'- aaCUUgAGCcCCAGCgUGU--ACGGCGc -5'
16205 5' -57.4 NC_004065.1 + 107259 0.67 0.87571
Target:  5'- -aGAACUCGaccGuGUCGCGCGUgaugagGCCGCa -3'
miRNA:   3'- aaCUUGAGCc--C-CAGCGUGUA------CGGCGc -5'
16205 5' -57.4 NC_004065.1 + 26148 0.67 0.853792
Target:  5'- -aGAGC-CGGGGUC-UGCGUGCCaGCc -3'
miRNA:   3'- aaCUUGaGCCCCAGcGUGUACGG-CGc -5'
16205 5' -57.4 NC_004065.1 + 157053 0.67 0.853792
Target:  5'- cUG-ACUCGGuuGGUC-UACGUGUCGCGg -3'
miRNA:   3'- aACuUGAGCC--CCAGcGUGUACGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 229481 0.67 0.853792
Target:  5'- -cGAACagGGGGcgcUCGCACAgggGgCGCGc -3'
miRNA:   3'- aaCUUGagCCCC---AGCGUGUa--CgGCGC- -5'
16205 5' -57.4 NC_004065.1 + 91130 0.68 0.846099
Target:  5'- cUGAGCgCGGGGUCGUAgAacCCGUGc -3'
miRNA:   3'- aACUUGaGCCCCAGCGUgUacGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 83322 0.68 0.830172
Target:  5'- -cGAGCgCGGcGUCGCcCAUGUCGUGg -3'
miRNA:   3'- aaCUUGaGCCcCAGCGuGUACGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 121033 0.68 0.830171
Target:  5'- aUGuuGCUCGGGGcCGCGaucGUCGCGu -3'
miRNA:   3'- aACu-UGAGCCCCaGCGUguaCGGCGC- -5'
16205 5' -57.4 NC_004065.1 + 48336 0.68 0.821949
Target:  5'- aUGAGC-CGGGGUCGgAagaccgagGUCGCGg -3'
miRNA:   3'- aACUUGaGCCCCAGCgUgua-----CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.