miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16206 3' -54.8 NC_004065.1 + 170430 0.66 0.984243
Target:  5'- uGCGg-CGGaUCGacgaAGGACGCCGCCGGa -3'
miRNA:   3'- -CGCaaGCCcAGCc---UCUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 210707 0.66 0.984243
Target:  5'- uGCGUccucCGGGUaGGAuGACGCCcgucGCCGGa -3'
miRNA:   3'- -CGCAa---GCCCAgCCUcUUGUGG----UGGUC- -5'
16206 3' -54.8 NC_004065.1 + 89782 0.66 0.984243
Target:  5'- uGCGUUUGGGacuaUCGGAuacGACAUCGgCGGc -3'
miRNA:   3'- -CGCAAGCCC----AGCCUc--UUGUGGUgGUC- -5'
16206 3' -54.8 NC_004065.1 + 107547 0.66 0.984065
Target:  5'- aGCug-CGGGUCGuGcgcuaccGGGACGCCACCc- -3'
miRNA:   3'- -CGcaaGCCCAGC-C-------UCUUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 90660 0.66 0.982402
Target:  5'- cGCGUcgUCGGuGgUGGAGAGCGCCGa--- -3'
miRNA:   3'- -CGCA--AGCC-CaGCCUCUUGUGGUgguc -5'
16206 3' -54.8 NC_004065.1 + 76139 0.66 0.982402
Target:  5'- cGCcagCGGGUCcccacGAACACCACCGu -3'
miRNA:   3'- -CGcaaGCCCAGccu--CUUGUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 130890 0.66 0.98182
Target:  5'- gGCGUga-GGUCcucaugagguguguGGAGcuCGCCGCCAGg -3'
miRNA:   3'- -CGCAagcCCAG--------------CCUCuuGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 162481 0.66 0.980405
Target:  5'- cGCGgcCGGccaGGAcgagGAGCGCCACUAGg -3'
miRNA:   3'- -CGCaaGCCcagCCU----CUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 65351 0.66 0.980405
Target:  5'- uGCGggUGGGUCGGucGGAucgaccugggcgACGCgCGCCGc -3'
miRNA:   3'- -CGCaaGCCCAGCC--UCU------------UGUG-GUGGUc -5'
16206 3' -54.8 NC_004065.1 + 3364 0.66 0.980405
Target:  5'- uCGuUUCGGGgCGGuAGAACAgUugCAGa -3'
miRNA:   3'- cGC-AAGCCCaGCC-UCUUGUgGugGUC- -5'
16206 3' -54.8 NC_004065.1 + 228064 0.66 0.979986
Target:  5'- aGCG-UCGGGccucccucaucaCGGGGGGCACCuACCu- -3'
miRNA:   3'- -CGCaAGCCCa-----------GCCUCUUGUGG-UGGuc -5'
16206 3' -54.8 NC_004065.1 + 128571 0.66 0.978018
Target:  5'- ----aCGGGUCaugacgaGGAGAACGgguCCGCCGGc -3'
miRNA:   3'- cgcaaGCCCAG-------CCUCUUGU---GGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 97986 0.66 0.97591
Target:  5'- cGUGUaCGGGUUGGA--GCACUACUu- -3'
miRNA:   3'- -CGCAaGCCCAGCCUcuUGUGGUGGuc -5'
16206 3' -54.8 NC_004065.1 + 115138 0.66 0.97591
Target:  5'- ----cCGGGUagGGAGAGguCACCGCCAu -3'
miRNA:   3'- cgcaaGCCCAg-CCUCUU--GUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 198243 0.66 0.97591
Target:  5'- ---aUCGGGggcgaGGAGGACACCAUa-- -3'
miRNA:   3'- cgcaAGCCCag---CCUCUUGUGGUGguc -5'
16206 3' -54.8 NC_004065.1 + 24951 0.66 0.973399
Target:  5'- aCGaUCGcGUUGGAuGACACUACCAGu -3'
miRNA:   3'- cGCaAGCcCAGCCUcUUGUGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 42692 0.67 0.970703
Target:  5'- cGCGUUCGgagcugcagaGGUCGGcGAGCGCUccuCCGc -3'
miRNA:   3'- -CGCAAGC----------CCAGCCuCUUGUGGu--GGUc -5'
16206 3' -54.8 NC_004065.1 + 146823 0.67 0.970703
Target:  5'- cGCGcaCGGGggacucGAGAGCggGCCGCCGGg -3'
miRNA:   3'- -CGCaaGCCCagc---CUCUUG--UGGUGGUC- -5'
16206 3' -54.8 NC_004065.1 + 61161 0.67 0.964736
Target:  5'- gGCGUcgaagaUCGGGUUGGA----ACCGCCGa -3'
miRNA:   3'- -CGCA------AGCCCAGCCUcuugUGGUGGUc -5'
16206 3' -54.8 NC_004065.1 + 142471 0.67 0.964736
Target:  5'- uGUGUaUGGGgCGGuGGACGCgaGCCAGg -3'
miRNA:   3'- -CGCAaGCCCaGCCuCUUGUGg-UGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.